View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_low_3 (Length: 691)
Name: NF17761_low_3
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 7e-85; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 225 - 384
Target Start/End: Original strand, 10591246 - 10591405
Alignment:
| Q |
225 |
ctttgctatcaaatcatattttttataatatacaaaatcagccaaaagcttttgtgaccaacttgtttaatcttttcgagtctcttcattttgacattta |
324 |
Q |
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| T |
10591246 |
ctttgctatcaaatcatattttttataatatacaaaatcagccaaaagcttttgtgaccaacttgtttaatcttttcgagtctcttcattttgacattta |
10591345 |
T |
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| Q |
325 |
tgtactcccttgagttatatattgcatgtatcaatcaaattttgtctatatttgagtcgg |
384 |
Q |
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| T |
10591346 |
tgtactcccttgagttatatattgcatgtatcaatcaaattttgtctatatttgagtcgg |
10591405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 10591022 - 10591161
Alignment:
| Q |
1 |
tttaattatatatgtcgtgcactaatatattagaagtttacaaccacaaatggagaataaaggagcaaatcaatataaaaaatacagtgcacttatgagt |
100 |
Q |
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| T |
10591022 |
tttaattatatatgtcgtgcactaatatattagaagtttacaaccacaaatggagaataaaggagcaaatcaatataaaaaatacagtgcacttatgagt |
10591121 |
T |
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| Q |
101 |
tttattctctgatcagctgcacttagcttagttaattgtt |
140 |
Q |
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| T |
10591122 |
tttattctctgatcagctgcacttagcttagttaattgtt |
10591161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 547 - 648
Target Start/End: Original strand, 10591654 - 10591755
Alignment:
| Q |
547 |
gagtaagttattacttacatatatacttgtacttgtagtataaaaaatgtgtatggagctataaatagttgtaaccattaattttgccggttggatataa |
646 |
Q |
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| T |
10591654 |
gagtaagttattaggtacatatatacttgtagttgtagtataaaaaatgtgtaaggagctataaatagttgtaacaattaattttgccggttgaatataa |
10591753 |
T |
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| Q |
647 |
cc |
648 |
Q |
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| T |
10591754 |
cc |
10591755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 484 - 560
Target Start/End: Original strand, 10591567 - 10591642
Alignment:
| Q |
484 |
taacgttgtgattaatcaatatcatcaatatcaccaaccataatgtcacccaatactacatgtgagtaagttattac |
560 |
Q |
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| T |
10591567 |
taacgttgtg-ttaaccaatatcatcaatatcactaaccataatgtcacccaatgctacctattggtaagttattac |
10591642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 536
Target Start/End: Complemental strand, 2254572 - 2254535
Alignment:
| Q |
499 |
tcaatatcatcaatatcaccaaccataatgtcacccaa |
536 |
Q |
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| T |
2254572 |
tcaatgtcatcaatatcaccaaccataatgtgacccaa |
2254535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 500 - 536
Target Start/End: Complemental strand, 20286939 - 20286903
Alignment:
| Q |
500 |
caatatcatcaatatcaccaaccataatgtcacccaa |
536 |
Q |
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|||| |||||||| ||||||||||||||||||||||| |
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| T |
20286939 |
caatgtcatcaatgtcaccaaccataatgtcacccaa |
20286903 |
T |
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