View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17761_low_32 (Length: 383)

Name: NF17761_low_32
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17761_low_32
NF17761_low_32
[»] chr5 (1 HSPs)
chr5 (18-261)||(26816582-26816825)
[»] chr3 (16 HSPs)
chr3 (18-261)||(10221224-10221467)
chr3 (148-258)||(10136661-10136771)
chr3 (153-261)||(10102197-10102305)
chr3 (153-261)||(10213120-10213228)
chr3 (132-238)||(10075126-10075232)
chr3 (296-376)||(10136544-10136624)
chr3 (148-261)||(10134023-10134136)
chr3 (132-261)||(10365524-10365653)
chr3 (132-261)||(10377996-10378125)
chr3 (298-376)||(10365675-10365753)
chr3 (298-376)||(10133923-10134001)
chr3 (296-358)||(10102101-10102163)
chr3 (296-358)||(10213024-10213086)
chr3 (56-134)||(10377893-10377971)
chr3 (18-59)||(10377819-10377860)
chr3 (65-134)||(10075257-10075326)
[»] scaffold0045 (1 HSPs)
scaffold0045 (148-258)||(85739-85849)
[»] chr4 (1 HSPs)
chr4 (56-134)||(25793682-25793760)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 26816825 - 26816582
Alignment:
Q  18 actcatagagtgagtagaggatcgcgaccataccccttacattccgaagagagaggatcctttaagggcacggtcgacagaagctgacacatcatgaggt 117  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26816825 actcatagagtgattggaggatcgcgaccataccccttacattccgaagagagaggatcctttaagggcacggtcgacagaagctgacacatcatgaggt 26816726  T
Q  118 gtgttgttgatgaacaacataagagtactggcaagataaacatatgcagcagcaagtttcatttattttactgtcataaagaaagctaaatgtaagtaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26816725 gtgttgttgatgaacaacataagagtactggcaagataaacatatgcagcagcaagtttcatttattttactgtcataaagaaagctaaatgtaagtaaa 26816626  T
Q  218 aactaaatcttatcagaaatttggacataaaccgaagtaaagtt 261  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  26816625 aactaaatcttatcagaaatttggacagaaaccgaagtaaagtt 26816582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 10221467 - 10221224
Alignment:
Q  18 actcatagagtgagtagaggatcgcgaccataccccttacattccgaagagagaggatcctttaagggcacggtcgacagaagctgacacatcatgaggt 117  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10221467 actcatagagtgattggaggatcgcgaccataccccttacattccgaagagagaggatcctttaagggcacggtcgacagaagctgacacatcatgaggt 10221368  T
Q  118 gtgttgttgatgaacaacataagagtactggcaagataaacatatgcagcagcaagtttcatttattttactgtcataaagaaagctaaatgtaagtaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10221367 gtgttgttgatgaacaacataagagtactggcaagataaacatatgcagcagcaagtttcatttattttactgtcataaagaaagctaaatgtaagtaaa 10221268  T
Q  218 aactaaatcttatcagaaatttggacataaaccgaagtaaagtt 261  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  10221267 aactaaatcttatcagaaatttggacagaaaccgaagtaaagtt 10221224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 148 - 258
Target Start/End: Complemental strand, 10136771 - 10136661
Alignment:
Q  148 gcaagataaacatatgcagcagcaagtttcatttattttactgtcataaagaaagctaaatgtaagtaaaaactaaatcttatcagaaatttggacataa 247  Q
    ||||||||||||| |||||||||||| ||||||||||||| |||||||||||| | | ||||||||||||||||||||| ||||||||||||||||||||    
T  10136771 gcaagataaacatctgcagcagcaagattcatttattttattgtcataaagaaggatgaatgtaagtaaaaactaaatcatatcagaaatttggacataa 10136672  T
Q  248 accgaagtaaa 258  Q
    |||||||||||    
T  10136671 accgaagtaaa 10136661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 153 - 261
Target Start/End: Complemental strand, 10102305 - 10102197
Alignment:
Q  153 ataaacatatgcagcagcaagtttcatttattttactgtcataaagaaagctaaatgtaagtaaaaactaaatcttatcagaaatttggacataaaccga 252  Q
    |||||||| |||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| |||||||    
T  10102305 ataaacatctgcagcagcaagattcatttattttattgtcataaagaaggctaaatgtaagtaaaaactaaagcttatcagaaatttagacagaaaccga 10102206  T
Q  253 agtaaagtt 261  Q
    |||||||||    
T  10102205 agtaaagtt 10102197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 153 - 261
Target Start/End: Complemental strand, 10213228 - 10213120
Alignment:
Q  153 ataaacatatgcagcagcaagtttcatttattttactgtcataaagaaagctaaatgtaagtaaaaactaaatcttatcagaaatttggacataaaccga 252  Q
    |||||||| |||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| |||||||    
T  10213228 ataaacatctgcagcagcaagattcatttattttattgtcataaagaaggctaaatgtaagtaaaaactaaagcttatcagaaatttagacagaaaccga 10213129  T
Q  253 agtaaagtt 261  Q
    |||||||||    
T  10213128 agtaaagtt 10213120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 132 - 238
Target Start/End: Complemental strand, 10075232 - 10075126
Alignment:
Q  132 caacataagagtactggcaagataaacatatgcagcagcaagtttcatttattttactgtcataaagaaagctaaatgtaagtaaaaactaaatcttatc 231  Q
    |||||||| |||||  ||||||||||||| |||||||||||| ||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||    
T  10075232 caacataacagtaccagcaagataaacatctgcagcagcaagattcatttattttattgtcataaagaaggctaaatgcaagtaaaaactaaatcttatc 10075133  T
Q  232 agaaatt 238  Q
    |||||||    
T  10075132 agaaatt 10075126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 296 - 376
Target Start/End: Complemental strand, 10136624 - 10136544
Alignment:
Q  296 gctattttcatgttctttgtttggaaacatgcaggtaagatatgatctagaatgttctttctcacaatgatggagaataat 376  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10136624 gctattttcatgtactttgtttggaaacatgcaggtaagatatgatctagaatgttctttctcataatgatggagaataat 10136544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 148 - 261
Target Start/End: Complemental strand, 10134136 - 10134023
Alignment:
Q  148 gcaagataaacatatgcagcagcaagtttcatttattttactgtcataaagaaagctaaatgtaagtaaaaactaaatcttatcagaaatttggacataa 247  Q
    ||||||||||||| ||||||| ||||  |||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| ||    
T  10134136 gcaagataaacatctgcagcaacaagactcatttattttattgtcataaagaaggctaaatgtcagtcaaaactaaatcttatcagaaatttggacagaa 10134037  T
Q  248 accgaagtaaagtt 261  Q
    | | ||||||||||    
T  10134036 atcaaagtaaagtt 10134023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 132 - 261
Target Start/End: Original strand, 10365524 - 10365653
Alignment:
Q  132 caacataagagtactggcaagataaacatatgcagcagcaagtttcatttattttactgtcataaagaaagctaaatgtaagtaaaaactaaatcttatc 231  Q
    |||||||| |||||  ||||||||||||| ||||||  |||| |||||||| |||  ||||||| |||| ||||||||| ||||||||||||||||||||    
T  10365524 caacataacagtaccagcaagataaacatctgcagctacaagattcatttaattttttgtcatagagaaggctaaatgtcagtaaaaactaaatcttatc 10365623  T
Q  232 agaaatttggacataaaccgaagtaaagtt 261  Q
    ||||||||||||| ||| ||||||||||||    
T  10365624 agaaatttggacagaaatcgaagtaaagtt 10365653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 132 - 261
Target Start/End: Original strand, 10377996 - 10378125
Alignment:
Q  132 caacataagagtactggcaagataaacatatgcagcagcaagtttcatttattttactgtcataaagaaagctaaatgtaagtaaaaactaaatcttatc 231  Q
    |||||||| |||||  ||||||||||||| |||||||  | | ||||||||||||| || |||| | || ||||||||||||||||||||||| ||||||    
T  10377996 caacataacagtaccagcaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatc 10378095  T
Q  232 agaaatttggacataaaccgaagtaaagtt 261  Q
    ||||||||||||| ||||||||||||||||    
T  10378096 agaaatttggacaaaaaccgaagtaaagtt 10378125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 298 - 376
Target Start/End: Original strand, 10365675 - 10365753
Alignment:
Q  298 tattttcatgttctttgtttggaaacatgcaggtaagatatgatctagaatgttctttctcacaatgatggagaataat 376  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10365675 tattttcatgttgtttgtttggaaatatgcaggtaagatatgatctagaatgttctttctcataatgatggagaataat 10365753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 298 - 376
Target Start/End: Complemental strand, 10134001 - 10133923
Alignment:
Q  298 tattttcatgttctttgtttggaaacatgcaggtaagatatgatctagaatgttctttctcacaatgatggagaataat 376  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  10134001 tattttcatgttgcttgtttggaaacatgcaggtaagatatgatctagaatgttctttcttataatgatggagaataat 10133923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 296 - 358
Target Start/End: Complemental strand, 10102163 - 10102101
Alignment:
Q  296 gctattttcatgttctttgtttggaaacatgcaggtaagatatgatctagaatgttctttctc 358  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  10102163 gctattttcatgttctttgtttggaaacatgcaggtcagatataatctagaatgttctttctc 10102101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 296 - 358
Target Start/End: Complemental strand, 10213086 - 10213024
Alignment:
Q  296 gctattttcatgttctttgtttggaaacatgcaggtaagatatgatctagaatgttctttctc 358  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||    
T  10213086 gctattttcatgttctttgtttggaaacatgcaggtcagatataatctagaatattctttctc 10213024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 10377893 - 10377971
Alignment:
Q  56 acattccgaagagagaggatcctttaagggcacggtcgacagaagctgacacatcatgaggtgtgttgttgatgaacaa 134  Q
    ||||||||||||||||||| |||||||| |||||||| ||||||| ||||| |||||||||||||||| | ||||||||    
T  10377893 acattccgaagagagaggaccctttaagcgcacggtcaacagaaggtgacatatcatgaggtgtgttgctaatgaacaa 10377971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 10377819 - 10377860
Alignment:
Q  18 actcatagagtgagtagaggatcgcgaccataccccttacat 59  Q
    ||||||||||||||| |||||||||||||||||||| |||||    
T  10377819 actcatagagtgagtggaggatcgcgaccataccccctacat 10377860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 10075326 - 10075257
Alignment:
Q  65 agagagaggatcctttaagggcacggtcgacagaagctgacacatcatgaggtgtgttgttgatgaacaa 134  Q
    ||||||||||||||||||||| |||||| ||||||  ||| |  ||||||||| ||||| |||| |||||    
T  10075326 agagagaggatcctttaagggaacggtccacagaacgtgaaatgtcatgaggtatgttgctgataaacaa 10075257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 148 - 258
Target Start/End: Complemental strand, 85849 - 85739
Alignment:
Q  148 gcaagataaacatatgcagcagcaagtttcatttattttactgtcataaagaaagctaaatgtaagtaaaaactaaatcttatcagaaatttggacataa 247  Q
    ||||||||||||| |||||||||||| ||||||||||||| |||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||    
T  85849 gcaagataaacatttgcagcagcaagattcatttattttattgtcataaagaaggatgaatgtaagtaaaaactaaatcttatcagaaatttggacataa 85750  T
Q  248 accgaagtaaa 258  Q
    |||||||||||    
T  85749 accgaagtaaa 85739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 25793760 - 25793682
Alignment:
Q  56 acattccgaagagagaggatcctttaagggcacggtcgacagaagctgacacatcatgaggtgtgttgttgatgaacaa 134  Q
    ||||||| |||||||||||||||||||||||||||||||||| || |  ||||||||||||||||||| ||||||||||    
T  25793760 acattccaaagagagaggatcctttaagggcacggtcgacagcaggttgcacatcatgaggtgtgttgctgatgaacaa 25793682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University