View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_low_33 (Length: 382)
Name: NF17761_low_33
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 42 - 361
Target Start/End: Original strand, 36455343 - 36455650
Alignment:
| Q |
42 |
atttggaatgatggccgctcaatttaaagcattcttggatgcaactggtggcctatggcgtactcagacacttgcaggaaagcctgcaggaatcttttac |
141 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
36455343 |
atttggaatgatggctgctcagtttaaagcattcttggatgcaactggtggcctatggcgtactcaggcacttgca------------ggaatcttttac |
36455430 |
T |
|
| Q |
142 |
agcactggttctcaaggaggaggacaggagactacaccgtgagttaccgaatctcactctcagttttgtttctaaaaaatatataaattcaaataggcca |
241 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36455431 |
agcactgcttctcaaggaggaggacaggagactacaccgtgagttaccgaatctcactctcagttttgtttctaaaaaatatataaattcaaataggccc |
36455530 |
T |
|
| Q |
242 |
ttattgcttttctgatttcaaaactctgcaggttgacttccgtcactcagcttgctcaccatggaatgatttttgtgcccattggttacacatttggtgc |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36455531 |
ttattgcttttctgatttcaaaactctgcaggttgacttccgtcactcagcttgctcaccatggaatgatttttgtgcccattggttacacatttggtgc |
36455630 |
T |
|
| Q |
342 |
tggtatgtttgagatggaga |
361 |
Q |
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|||||||||| ||||||||| |
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| T |
36455631 |
tggtatgtttcagatggaga |
36455650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 42 - 213
Target Start/End: Original strand, 36461714 - 36461883
Alignment:
| Q |
42 |
atttggaatgatggccgctcaatttaaagcattcttggatgcaactggtggcctatggcgtactcagacacttgcaggaaagcctgcaggaatcttttac |
141 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36461714 |
atttggaatgatggctgctcagtttaaagcattcttggatgcaactggtggcctatggcgtactcaggcacttgcaggaaagcctgcaggaatcttttac |
36461813 |
T |
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| Q |
142 |
agcactggttctcaaggaggaggacaggagactacaccgtgagttaccgaatctcactctcagttttgtttc |
213 |
Q |
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| T |
36461814 |
agcactggttctcagggaggaggacaagagactacaccgtgagttcccgaatctca--ctcagttttgtttc |
36461883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 231 - 365
Target Start/End: Original strand, 36462163 - 36462297
Alignment:
| Q |
231 |
caaataggccattattgcttttctgatttcaaaactctgcaggttgacttccgtcactcagcttgctcaccatggaatgatttttgtgcccattggttac |
330 |
Q |
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|||||||||| | ||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36462163 |
caaataggccctgattgcttttctgatttcaaaattctgcaggttgacatccatcactcagcttgctcaccatggaatgatttttgtgcccattggttac |
36462262 |
T |
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| Q |
331 |
acatttggtgctggtatgtttgagatggagaacat |
365 |
Q |
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| T |
36462263 |
acatttggtgctggtatgtttgagatggagaacat |
36462297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 2649518 - 2649374
Alignment:
| Q |
42 |
atttggaatgatggccgctcaatttaaagcattcttggatgcaactggtggcctatggcgtactcagacacttgcaggaaagcctgcaggaatcttttac |
141 |
Q |
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||||||||||||||| ||||||| |||||||| ||||| ||||||| | ||||||| | || |||| |||||||||||||||||| || ||||||||| |
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| T |
2649518 |
atttggaatgatggctactcaattcaaagcatttatggatacaactggagacctatggtgcacacagaaacttgcaggaaagcctgctggcatcttttac |
2649419 |
T |
|
| Q |
142 |
agcactggttctcaaggaggaggacaggagactacaccgtgagtt |
186 |
Q |
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||||||| || ||||||||| || || || ||||||||||||||| |
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| T |
2649418 |
agcactgcttgtcaaggaggtggccaagaaactacaccgtgagtt |
2649374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 286 - 359
Target Start/End: Complemental strand, 2644187 - 2644114
Alignment:
| Q |
286 |
actcagcttgctcaccatggaatgatttttgtgcccattggttacacatttggtgctggtatgtttgagatgga |
359 |
Q |
| |
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|||||||||| ||||||||| ||| ||||||| || ||||| ||||||||||||||||| |||||||||||||| |
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| T |
2644187 |
actcagcttgttcaccatggcatgctttttgtacctattggatacacatttggtgctggaatgtttgagatgga |
2644114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 34339690 - 34339755
Alignment:
| Q |
112 |
cttgcaggaaagcctgcaggaatcttttacagcactggttctcaaggaggaggacaggagactaca |
177 |
Q |
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| T |
34339690 |
cttgcaggcaagcctgccggaatcttctacagcactggttctcaaggtggaggacaagagactaca |
34339755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 177
Target Start/End: Original strand, 23576266 - 23576401
Alignment:
| Q |
42 |
atttggaatgatggccgctcaatttaaagcattcttggatgcaactggtggcctatggcgtactcagaca-cttgcaggaaagcctgcaggaatctttta |
140 |
Q |
| |
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||||||||||||||| ||||| |||||||| || | |||||||||||||| |||||| || || ||| ||||| || |||||||| |||||||| || |
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| T |
23576266 |
atttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggactatggaaaacaca-acagcttgccggtaagcctgctggaatcttcta |
23576364 |
T |
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| Q |
141 |
cagcactggttctcaaggaggaggacaggagactaca |
177 |
Q |
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|||||| |||| ||||| || || || ||||||||| |
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| T |
23576365 |
cagcaccagttcccaaggcggtggccaagagactaca |
23576401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 177
Target Start/End: Original strand, 23590573 - 23590708
Alignment:
| Q |
42 |
atttggaatgatggccgctcaatttaaagcattcttggatgcaactggtggcctatggcgtactcagaca-cttgcaggaaagcctgcaggaatctttta |
140 |
Q |
| |
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||||||||||||||| |||||||||||||| || | |||||||||||||| || ||| || || ||| |||| ||| |||||||| ||||||| || |
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| T |
23590573 |
atttggaatgatggctgctcaatttaaagcctttctagatgcaactggtggtctttggaaaacaca-acagcttgtagggaagcctgccagaatcttcta |
23590671 |
T |
|
| Q |
141 |
cagcactggttctcaaggaggaggacaggagactaca |
177 |
Q |
| |
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|| |||| |||| ||||| || ||||| ||||||||| |
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| T |
23590672 |
caacactagttcccaaggcggtggacaagagactaca |
23590708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 359
Target Start/End: Original strand, 23591117 - 23591175
Alignment:
| Q |
301 |
catggaatgatttttgtgcccattggttacacatttggtgctggtatgtttgagatgga |
359 |
Q |
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||||||||| | ||||| || ||||| || |||||||||||||| |||||||||||||| |
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| T |
23591117 |
catggaatgttatttgttccaattgggtatacatttggtgctggaatgtttgagatgga |
23591175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 23576819 - 23576876
Alignment:
| Q |
301 |
catggaatgatttttgtgcccattggttacacatttggtgctggtatgtttgagatgg |
358 |
Q |
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||||||||| | ||||| || ||||| || |||||||||||||| ||||||||||||| |
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| T |
23576819 |
catggaatgctatttgttccaattgggtatacatttggtgctggaatgtttgagatgg |
23576876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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