View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_low_35 (Length: 374)
Name: NF17761_low_35
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_low_35 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 374
Target Start/End: Complemental strand, 37791359 - 37790983
Alignment:
| Q |
13 |
aatatcaaatgacataaaatattaaaaggttacaagagaatatatataaaacttaatgaattttactaacttaaaaacataaatgattcaatggtataaa |
112 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
37791359 |
aatatcaaataacataacatattaaaaggttacaagagaatatatataaaacttaatgaattttactaacttagaaacataaatggctcaatggtataag |
37791260 |
T |
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| Q |
113 |
tataatcttattatctaacatcttccttcatactcacga-------tgcaacaacaaacagcatcgagagtttatcaaacnnnnnnnnnnnnncatattc |
205 |
Q |
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| T |
37791259 |
tataatcttattatctaacatctccctttatactcacgaatcacgatgcaacaacaaatagcatcgagaatttgccaaacaaaaaatgaaaaacatattc |
37791160 |
T |
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| Q |
206 |
aataatatagactcaaaatactacccatg----aagctaaagttttaagcttattacaaaattaaccctaacaataaactaaaacaaactaat----tta |
297 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
37791159 |
aataatatagactcaaaatactacccatgcatgaagctaaagttttaagcttattacaaaattaaccctaacaataaactaaaacaaactaatagtgtaa |
37791060 |
T |
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| Q |
298 |
ccaaagcaatcacaccatcaactatagagaggagtatcggccaaatgggaagaatcatcaaagacagaagcggggaa |
374 |
Q |
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| T |
37791059 |
ccaaagcaatcacaccatcaaccatagagaggagtatcggccaaatgggaagaatcatcaaagacagaagcgaggaa |
37790983 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 24727086 - 24727049
Alignment:
| Q |
35 |
taaaaggttacaagagaatatatataaaacttaatgaa |
72 |
Q |
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| T |
24727086 |
taaaaggttacaagagagtatatataaaacataatgaa |
24727049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 9365123 - 9365156
Alignment:
| Q |
36 |
aaaaggttacaagagaatatatataaaacttaat |
69 |
Q |
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| T |
9365123 |
aaaaggttacaagagaatatatataaaacctaat |
9365156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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