View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_low_36 (Length: 371)
Name: NF17761_low_36
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 153 - 353
Target Start/End: Original strand, 5680358 - 5680558
Alignment:
| Q |
153 |
tgctcttatttgtaactcttagtctcaagtgaaacatcttttgatgaaattttctcacaggtttatctagttgaacttggagagcacaatattaatggag |
252 |
Q |
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| T |
5680358 |
tgctcttatttgtaactcttagtctcaagtgaaacatcttttgatgaaattttctcacaggtttatctagttgaacttggagagaacaatattaaaggag |
5680457 |
T |
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| Q |
253 |
ataaaaaactgcatgaaatagagaatacacatcactcttatttgcttttggtgaaagaaactgaggatgaagctcgagcttcccatctttacagttacaa |
352 |
Q |
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| T |
5680458 |
ataaaacactgcatgaaatagagaatacacatcactcttatttgcttttggtgaaagaaactgaggatgaagctcgagcttcccatctttacagttacaa |
5680557 |
T |
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| Q |
353 |
a |
353 |
Q |
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| T |
5680558 |
a |
5680558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 201 - 349
Target Start/End: Original strand, 5689719 - 5689864
Alignment:
| Q |
201 |
attttctcacaggtttatctagttgaacttggagagcacaatattaatggagataaaaaactgcatgaaatagagaatacacatcactcttatttgcttt |
300 |
Q |
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| T |
5689719 |
attttctcacaggtttatctagtggaatttggagagcacaata---atggacataaaacactgcatgaaatagagaatacacatcactcttatttgcttt |
5689815 |
T |
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| Q |
301 |
tggtgaaagaaactgaggatgaagctcgagcttcccatctttacagtta |
349 |
Q |
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| T |
5689816 |
tggtaaaagaaactgaggaggaagctagggtttcccttctttatagtta |
5689864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 5680215 - 5680292
Alignment:
| Q |
10 |
acatcatcatttccacaacatgtctcttcctcctcctcctccttcttccattggtgtcatgcaccaataataatcagg |
87 |
Q |
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| T |
5680215 |
acatcatcatttccacaacatgtctcttcctcctcctgctccttcttccattggtgtcatgcaccaataataatcagg |
5680292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 5689598 - 5689642
Alignment:
| Q |
43 |
tcctcctccttcttccattggtgtcatgcaccaataataatcagg |
87 |
Q |
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| T |
5689598 |
tccttctccttcttccattggtctcatgcaccaaaaataatcagg |
5689642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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