View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_low_38 (Length: 364)
Name: NF17761_low_38
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 26 - 347
Target Start/End: Original strand, 30573342 - 30573662
Alignment:
| Q |
26 |
cccctgctgatcttgatttagaagaacttctaaaagtgaaggcttcattgaaagagctagatggtgacgttgaggtcgaatcatctttgtttctccttgc |
125 |
Q |
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|||||||||||||||||||| | |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30573342 |
cccctgctgatcttgatttaaaggaacttttaaa-gtgaaggcttcattgaaagagctagatggtgacgttgaggtcgaatcatctttgtttctccttgc |
30573440 |
T |
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| Q |
126 |
aaagaaaccaagtagattgcagcatataagcctcattggttcggattgtaaagtatgagaaaaatctaatgttatgaaaactaattactaaatagaagtt |
225 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30573441 |
aaagaaaccaagtagattgcagcatataagtctcattggttcggattgtaaagtatgagaaaaatctaatgttatgaaaactaattactaaatagaagtt |
30573540 |
T |
|
| Q |
226 |
gtgttgttcaattttagaaatctatcttgataattcactctgttttgcaattattagtcacatgtaacgtataattcctgatcaagggctctgtacaagt |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30573541 |
gtgttgttcaattttagaaatctatcttgataattcactctgttttgcaattattagtcacatgtaacgtataattcctgatcaagggctctgtacaagt |
30573640 |
T |
|
| Q |
326 |
tatatgtacctttttcagatat |
347 |
Q |
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|||||||||||||||||||||| |
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| T |
30573641 |
tatatgtacctttttcagatat |
30573662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 25 - 327
Target Start/End: Original strand, 30569890 - 30570203
Alignment:
| Q |
25 |
tcccctgctgatcttgatttagaagaacttctaaaagtgaaggcttcattgaaagagctagatggtgacgttgaggtcgaatcatctttgtttctccttg |
124 |
Q |
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| T |
30569890 |
tcccctgctgatcttgatttagaggaacttctaaa-gtgaaggctttattgaaagagctagatggtgacattgaggtcgcatcatctttgtttcgccttg |
30569988 |
T |
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| Q |
125 |
caaagaaaccaa---------gtagattgcagcatataagcctcattggttcggattgtaaagtatgagaaaaatctaatgttatgaaaactaattacta |
215 |
Q |
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| T |
30569989 |
caaagaaacctatataatcgagagggtcgcagcatataagcgtcattggttcggattgtaaagtatgagaaaaatccaatgttatgaaaagtaattacta |
30570088 |
T |
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| Q |
216 |
a--atagaagttgtgttgttcaattttagaaatctatcttg-ataattcactctgttttgcaattattagtcacatgtaacgtataattcctgatcaagg |
312 |
Q |
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| | ||| ||||||||||||||||||||||| ||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30570089 |
attagagattttgtgttgttcaattttagaaattgatcatgaataattcactttgttttgcaattattagtcacatgtaacgtataattcctgatccaga |
30570188 |
T |
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| Q |
313 |
gctctgtacaagtta |
327 |
Q |
| |
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|| ||||||||||| |
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| T |
30570189 |
gcgatgtacaagtta |
30570203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 30573153 - 30573269
Alignment:
| Q |
18 |
acctatctcccctgctgatcttgatttagaagaacttctaaaagtgaaggcttcattgaaagagctagatggtgacgttgaggtcgaatcatctttgttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| | ||||| |||| || |
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| T |
30573153 |
acctatctcccctgctgatcttgatttagaagaacttctaaaagtgaaggcttcattgaaagagctccatggtgacattgaggcagcatcatatttgatt |
30573252 |
T |
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| Q |
118 |
ctccttgcaaagaaacc |
134 |
Q |
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||||||||||||||||| |
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| T |
30573253 |
ctccttgcaaagaaacc |
30573269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 30569588 - 30569647
Alignment:
| Q |
20 |
ctatctcccctgctgatcttgatttagaagaacttctaaaagtgaaggcttcattgaaag |
79 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30569588 |
ctatttcccttgctgatcttgatttagaagaacttctaaaagtgaaggcttcattgaaag |
30569647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 30569720 - 30569776
Alignment:
| Q |
134 |
caagtagattgcagcatataagcctcattggttcggattgtaaagtatgagaaaaat |
190 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||||| | ||||||||||| |
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| T |
30569720 |
caagtagattgcagcatacaagtctcattggttcggattgtaaggcatgagaaaaat |
30569776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 38419621 - 38419720
Alignment:
| Q |
32 |
ctgatcttgatttagaagaacttctaaaagtgaaggcttcattgaaagagctagatggtgacgttgaggtcgaatcatctttgtttctccttgcaaagaa |
131 |
Q |
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|||||||||| |||||||||||||||||||||||| | ||| ||||||| || ||||| || |||||| | |||||||||| |||||||||||||||| |
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| T |
38419621 |
ctgatcttgacttagaagaacttctaaaagtgaagacatcactgaaagatctccatggtaacattgaggcagcatcatctttgcttctccttgcaaagaa |
38419720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 38436104 - 38436165
Alignment:
| Q |
32 |
ctgatcttgatttagaagaacttctaaaagtgaaggcttcattgaaagagctagatggtgac |
93 |
Q |
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|||||||| | ||| |||||||||||||||||||| |||| |||||||||| |||||||| |
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| T |
38436104 |
ctgatcttaacttaaaagaacttctaaaagtgaagtcttcgctgaaagagcttcatggtgac |
38436165 |
T |
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