View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_low_44 (Length: 345)
Name: NF17761_low_44
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 24266657 - 24266811
Alignment:
| Q |
18 |
atatatacatgtttgcaatgataacattaacgagtaaaagcatagaggacaagaataacatagataagtaacgcagtaggaacaagaaaaagcaaaggag |
117 |
Q |
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| T |
24266657 |
atatatacatgtttgcaatgataacgttaacgagtaaaagcatagaggacaagaataacatagataagtaacgcagtaggaacaagaaaaagcaaaggag |
24266756 |
T |
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| Q |
118 |
caacagcagccaaagtaaaatgactcccacaagccaaagttcccaacttaatctg |
172 |
Q |
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| T |
24266757 |
caacagcagccaaagtataatgactcccacaagccaaagttcccaacttaatctg |
24266811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 260 - 337
Target Start/End: Original strand, 24266899 - 24266976
Alignment:
| Q |
260 |
agtattaacttccgcagcaagttcggcataaccctgcaccaagtaatttctagcagcagctccatcaacacctttgct |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24266899 |
agtattaacttccgcagcaagttcggcataaccctgcaccaagtaatttctagcagcagctccatcaacacctttgct |
24266976 |
T |
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