View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17761_low_47 (Length: 333)

Name: NF17761_low_47
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17761_low_47
NF17761_low_47
[»] chr2 (5 HSPs)
chr2 (124-198)||(41900441-41900515)
chr2 (2-60)||(41900319-41900377)
chr2 (124-182)||(41900249-41900307)
chr2 (2-60)||(41900511-41900569)
chr2 (2-60)||(41900127-41900185)


Alignment Details
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 41900441 - 41900515
Alignment:
Q  124 cttgtagatgtaagaaaggggtagttttgcagatggtggaggaggagacttatagacatgcttaggttgtggtga 198  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||    
T  41900441 cttgtagatgtaagaaaggggtagtgatgcagatggtggaggaggagacttatagacatacttaggttgtggtga 41900515  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 41900319 - 41900377
Alignment:
Q  2 ggtgatggagagggaggtgaaggagatttgtagacatatggtggaggaagtgaaggaga 60  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41900319 ggtgaaggagagggaggtggaggagatttgtagacatatggtggaggaagtgaaggaga 41900377  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 41900249 - 41900307
Alignment:
Q  124 cttgtagatgtaagaaaggggtagttttgcagatggtggaggaggagacttatagacat 182  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||    
T  41900249 cttgtagatgtaagaaaggggtagtgatgcagatggtggaggaggagacttgtagacat 41900307  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 41900511 - 41900569
Alignment:
Q  2 ggtgatggagagggaggtgaaggagatttgtagacatatggtggaggaagtgaaggaga 60  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||    
T  41900511 ggtgatggagagggaggtggaggagatttgtagacatatggcggaggaggtgaaggaga 41900569  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 41900127 - 41900185
Alignment:
Q  2 ggtgatggagagggaggtgaaggagatttgtagacatatggtggaggaagtgaaggaga 60  Q
    ||||| ||||||||||||| |||||||||||||||||| ||||||||| |||| |||||    
T  41900127 ggtgaaggagagggaggtggaggagatttgtagacatacggtggaggaggtgagggaga 41900185  T

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