View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_low_49 (Length: 324)
Name: NF17761_low_49
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_low_49 |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: scaffold0037 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 28819 - 28573
Alignment:
| Q |
1 |
ttattcatcccc-gctatattgttcactttccatcacatgtcttaattttgcagctattctgaaaggaaaaatagaaagacnnnnnnnnngtagtagcat |
99 |
Q |
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| T |
28819 |
ttattcatcccctgcaatattgttcactttccatcacatgtcttaattttgcagctattctgaaaggaaaaatagaaagacacaaaaa--gtagtagcat |
28722 |
T |
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| Q |
100 |
aaataaaatgaataatgtattcccattgtttgtcattaattcatttatggtctttttcttatcaagaagtctcgtgactataattccatctttttaaagt |
199 |
Q |
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| T |
28721 |
aaataaaatgaataatgtattctcattgtttg--------------atggtctttttcttatcaagtagtctagtgactataattctatctttttaaagt |
28636 |
T |
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| Q |
200 |
gaataagttggaaatctgaagttgtaacctcaacgctgcatatataatacaatgtctctgtca |
262 |
Q |
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| T |
28635 |
gaataagttggaaatctgaagttgtaacctcgacgctgcatatataatacaatgtctctgtca |
28573 |
T |
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Target: chr6 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 10425621 - 10425309
Alignment:
| Q |
1 |
ttattcatccccgctatattgttcactttccatcacatgtcttaattttgcagctattctgaaaggaaaaatagaaagacnnnnnnnnngtagtagcata |
100 |
Q |
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| T |
10425621 |
ttattcatccccgctatattgttcactttccatcacatgtcttaattttgcagctattctcaaaggaaaaatagaaagac--aaaaaaagtagtagcata |
10425524 |
T |
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| Q |
101 |
aataaaatgaataatgtattcccattgtttgtcattaattcat----tta---tggtctttttcttatcaagaagtctcgtgactataattccatctttt |
193 |
Q |
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| T |
10425523 |
aataaaatgaataatgtattctcattgtttgtcattaattcattatgttatgttggtccctttcttatcatgcagtttagtgattataatt-aatctttt |
10425425 |
T |
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| Q |
194 |
taaagtgaataagttggaaatctgaagttgtaacctcaacgctgcatatataatacaatgtctctgtcaac----tcttcacggcgacaatgttcttttc |
289 |
Q |
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| T |
10425424 |
taaggtgaataagtggaaaacc-----------ccccaatcttacaagtataatacaatgtttctgtcaactgaatcttcacggcgacaacgttcttttc |
10425336 |
T |
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| Q |
290 |
ggctttatgtacaatattattcatttc |
316 |
Q |
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| T |
10425335 |
ggctttatgtacaatattattcatttc |
10425309 |
T |
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