View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_low_5 (Length: 593)
Name: NF17761_low_5
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 12 - 577
Target Start/End: Original strand, 28046338 - 28046903
Alignment:
| Q |
12 |
agaggaagatgaagaaccaattgaagaggaggtatatggcagatctctgctagggaagctttggactgataatgcttacaacgttagagcttttaagcaa |
111 |
Q |
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| T |
28046338 |
agaggaagatgaagaaccaattgaagaggaggtatatggcagatctctgctagggaagctttggactgataatgcttacaatgttagagcttttaagcaa |
28046437 |
T |
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| Q |
112 |
acgattgtggaattctggaggctcaaaaatccagttgaaacacaagaacttggtaagaatctttaccttttccggttttgtaataaacgtgatatggaaa |
211 |
Q |
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| T |
28046438 |
acgattgtggaattctggaggctcaaaaatccagttgaaacacaagaacttggtaagaatctttaccttttccggttttgtaataaacgtgatctggaaa |
28046537 |
T |
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| Q |
212 |
atgtgataaaaaatggaccttggagctttgatagaaatattctggtactgaagagggttacaggtactgaacaaccttctgaaatagaaatgaattcaat |
311 |
Q |
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| T |
28046538 |
atgtgataaaaaatggaccttggagctttgatagaaatattctggtattgaagagggttacaggtactgaacaaccttctgaaatagaaatgaattcaat |
28046637 |
T |
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| Q |
312 |
gtcattttgggcaaggatttatgatttaccccttaagttaagattcgaatccatggcaaaaaagctcggtaatgtgatgggtcaatttgttgaagctgat |
411 |
Q |
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| T |
28046638 |
gtcattttgggcaaggatttatgatttaccccttaagttaagattcgaatccatggcaaaaaagctcggtaatgtgatgggtcaatttgttgaagctgat |
28046737 |
T |
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| Q |
412 |
gctaaagaaagccaccgtttgggtcgttttttgagaactaaagtcaccattaatctcacaaagccgctgaaaaggggaacgattatcaggtacaatggta |
511 |
Q |
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| T |
28046738 |
gttaaagaaagccaccgtctgggtcgttttttgagaactaaagtcaccattaatctcacaaagccgctgaaaaggggaacaattattaggtacaatggta |
28046837 |
T |
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| Q |
512 |
aagatttaatggtcttcttcaaatatgaaaggctacccactttttgctttatgtgtgggagaatag |
577 |
Q |
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| T |
28046838 |
aagatttaatggtcttcttcaaatatgaaaggctacccacattttgctttatgtgtgggagaatag |
28046903 |
T |
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