View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17761_low_53 (Length: 304)

Name: NF17761_low_53
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17761_low_53
NF17761_low_53
[»] chr4 (34 HSPs)
chr4 (37-289)||(6247267-6247519)
chr4 (37-140)||(6246784-6246887)
chr4 (44-145)||(10421521-10421622)
chr4 (44-145)||(15481510-15481611)
chr4 (44-143)||(15481042-15481141)
chr4 (83-145)||(10420963-10421025)
chr4 (37-140)||(30808621-30808724)
chr4 (36-143)||(45331395-45331502)
chr4 (91-143)||(50709713-50709765)
chr4 (67-143)||(50710359-50710435)
chr4 (37-143)||(30809447-30809553)
chr4 (67-140)||(53664242-53664315)
chr4 (91-143)||(53665028-53665080)
chr4 (91-133)||(13856645-13856687)
chr4 (38-108)||(25370507-25370577)
chr4 (38-137)||(3847887-3847987)
chr4 (51-106)||(232028-232083)
chr4 (66-141)||(34956313-34956388)
chr4 (36-143)||(45330564-45330671)
chr4 (37-83)||(11417687-11417733)
chr4 (37-83)||(11417939-11417985)
chr4 (37-83)||(26611285-26611331)
chr4 (37-83)||(29651334-29651380)
chr4 (37-83)||(36865719-36865765)
chr4 (37-83)||(47376852-47376898)
chr4 (37-83)||(47377600-47377646)
chr4 (67-141)||(50709022-50709096)
chr4 (44-116)||(11680283-11680356)
chr4 (44-116)||(11688562-11688635)
chr4 (51-139)||(34371476-34371564)
chr4 (37-129)||(45235916-45236008)
chr4 (51-83)||(47326791-47326823)
chr4 (51-83)||(47341587-47341619)
chr4 (51-83)||(55514356-55514388)
[»] chr1 (24 HSPs)
chr1 (36-289)||(11469562-11469814)
chr1 (37-145)||(14925282-14925390)
chr1 (37-145)||(11469081-11469189)
chr1 (44-145)||(14924681-14924782)
chr1 (36-145)||(31787477-31787586)
chr1 (61-145)||(31788216-31788300)
chr1 (36-143)||(7463414-7463521)
chr1 (51-137)||(2687675-2687761)
chr1 (37-143)||(7464012-7464118)
chr1 (66-143)||(11426882-11426959)
chr1 (67-141)||(38618260-38618334)
chr1 (37-138)||(42384101-42384202)
chr1 (51-103)||(49420098-49420150)
chr1 (76-143)||(11427449-11427516)
chr1 (36-83)||(16270206-16270253)
chr1 (36-83)||(23440867-23440914)
chr1 (37-143)||(11032161-11032267)
chr1 (51-141)||(36387992-36388082)
chr1 (66-132)||(37889908-37889974)
chr1 (37-83)||(51974437-51974483)
chr1 (37-83)||(51987827-51987873)
chr1 (36-109)||(11031430-11031503)
chr1 (37-129)||(29334214-29334306)
chr1 (42-141)||(49611503-49611603)
[»] chr8 (17 HSPs)
chr8 (37-289)||(12349967-12350218)
chr8 (37-145)||(12350594-12350702)
chr8 (37-143)||(43924490-43924596)
chr8 (37-145)||(43924958-43925066)
chr8 (61-145)||(43971302-43971386)
chr8 (61-145)||(43972026-43972110)
chr8 (61-140)||(39257658-39257737)
chr8 (91-143)||(38686357-38686409)
chr8 (67-140)||(38687000-38687073)
chr8 (91-143)||(33801553-33801605)
chr8 (86-143)||(15183790-15183847)
chr8 (67-140)||(33802318-33802391)
chr8 (86-143)||(39258391-39258448)
chr8 (37-83)||(61454-61500)
chr8 (37-83)||(1365829-1365875)
chr8 (37-83)||(34992266-34992312)
chr8 (37-83)||(41859310-41859356)
[»] chr3 (10 HSPs)
chr3 (37-145)||(38337417-38337525)
chr3 (37-143)||(38336944-38337048)
chr3 (37-141)||(44022031-44022135)
chr3 (37-143)||(49287687-49287793)
chr3 (36-83)||(19132814-19132861)
chr3 (71-130)||(15450259-15450318)
chr3 (37-84)||(17226968-17227015)
chr3 (36-83)||(19132562-19132609)
chr3 (37-83)||(36750439-36750485)
chr3 (37-74)||(42108370-42108407)
[»] scaffold0189 (2 HSPs)
scaffold0189 (37-143)||(12801-12907)
scaffold0189 (37-145)||(12184-12292)
[»] chr5 (14 HSPs)
chr5 (51-144)||(4554671-4554764)
chr5 (36-143)||(4555331-4555438)
chr5 (37-129)||(8040400-8040492)
chr5 (51-109)||(26712364-26712422)
chr5 (51-109)||(26982102-26982160)
chr5 (37-130)||(17767546-17767639)
chr5 (36-83)||(2319265-2319312)
chr5 (37-83)||(8204120-8204166)
chr5 (37-83)||(9142047-9142093)
chr5 (37-83)||(15184019-15184065)
chr5 (37-83)||(33002818-33002864)
chr5 (37-83)||(39950404-39950450)
chr5 (185-230)||(4554820-4554865)
chr5 (41-137)||(39167388-39167484)
[»] chr6 (10 HSPs)
chr6 (37-145)||(27763413-27763521)
chr6 (37-83)||(24125972-24126018)
chr6 (35-83)||(3543065-3543113)
chr6 (37-83)||(7193338-7193384)
chr6 (37-83)||(24126720-24126766)
chr6 (37-83)||(33480630-33480676)
chr6 (42-83)||(3542819-3542860)
chr6 (42-83)||(22582481-22582522)
chr6 (42-83)||(22587312-22587353)
chr6 (42-83)||(33479701-33479742)
[»] chr2 (24 HSPs)
chr2 (37-145)||(4975696-4975804)
chr2 (61-143)||(4976447-4976529)
chr2 (61-143)||(4994354-4994436)
chr2 (37-145)||(4993604-4993712)
chr2 (37-143)||(37545676-37545782)
chr2 (37-133)||(36718974-36719070)
chr2 (51-143)||(41519867-41519959)
chr2 (51-143)||(42370892-42370984)
chr2 (53-105)||(1271247-1271299)
chr2 (91-143)||(8536828-8536880)
chr2 (95-143)||(42369701-42369749)
chr2 (37-143)||(37546506-37546612)
chr2 (37-103)||(41984727-41984793)
chr2 (91-140)||(8536191-8536240)
chr2 (31-83)||(21471956-21472008)
chr2 (37-83)||(14573261-14573307)
chr2 (37-83)||(21471017-21471063)
chr2 (37-83)||(30545437-30545483)
chr2 (36-129)||(4479658-4479751)
chr2 (51-108)||(34617667-34617724)
chr2 (37-137)||(41042542-41042643)
chr2 (37-137)||(45139692-45139793)
chr2 (51-103)||(36390971-36391023)
chr2 (37-73)||(44154276-44154312)
[»] chr7 (17 HSPs)
chr7 (37-143)||(27599211-27599317)
chr7 (62-143)||(46757449-46757530)
chr7 (36-145)||(46759202-46759311)
chr7 (36-143)||(27600037-27600144)
chr7 (34-83)||(38779565-38779614)
chr7 (36-83)||(668178-668225)
chr7 (36-99)||(45887278-45887341)
chr7 (66-140)||(12732276-12732350)
chr7 (37-83)||(17145622-17145668)
chr7 (37-83)||(37468910-37468956)
chr7 (37-83)||(37469007-37469053)
chr7 (37-83)||(38778854-38778900)
chr7 (37-83)||(41194513-41194559)
chr7 (37-83)||(45887982-45888028)
chr7 (42-83)||(7677811-7677852)
chr7 (38-99)||(48259804-48259865)
chr7 (51-91)||(35771253-35771293)
[»] scaffold0119 (2 HSPs)
scaffold0119 (53-105)||(29938-29990)
scaffold0119 (61-105)||(36620-36664)
[»] scaffold0071 (1 HSPs)
scaffold0071 (71-130)||(11873-11932)
[»] scaffold0311 (1 HSPs)
scaffold0311 (37-83)||(162-208)


Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 37 - 289
Target Start/End: Complemental strand, 6247519 - 6247267
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatactttt-atcatagacact 135  Q
    |||||| |||||||||||||||| |||||||||| ||  ||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||    
T  6247519 ggtggcgtttaatttgggaaagggaagttgtttctcatcatgggaaaactaattttgatcattagataaagtagagaacatactttttatcatagacact 6247420  T
Q  136 caacaccagannnnnnnctcacactcaccactctcattcaacaccagattttcttcttgtcattcaaaccttatcagctcagaaaaattgattttgtatc 235  Q
    ||||||||||       | ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||    
T  6247419 caacaccagatttttttc-cacactcaccactctcattcaacaccagattttcttcctctcattcaaaccttatcagctcaggaaaattgattttgtatc 6247321  T
Q  236 caatttgctacaaatgacaaatttgctacccaactctctttcttcccgtctctg 289  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  6247320 caatttgctacaaatgaaaaatttgctacccaactctctttcttcccgtttctg 6247267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 6246784 - 6246887
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactc 136  Q
    |||||| |||||||||||||||| || ||||||||||| ||||||||  |||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  6246784 ggtggcgtttaatttgggaaagggaaattgtttcccaccatgggaaagttaattttgaccattagataaggtagagaacatacttttatcatagacactc 6246883  T
Q  137 aaca 140  Q
    ||||    
T  6246884 aaca 6246887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 10421622 - 10421521
Alignment:
Q  44 tttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaacacca 143  Q
    |||||||||||||||| ||||||||| |||| |||||||| |||||||||||| |||||| || ||| ||||||| ||||||||||||||||||||||||    
T  10421622 tttaatttgggaaagggaagttgttttccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacacca 10421523  T
Q  144 ga 145  Q
    ||    
T  10421522 ga 10421521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 15481611 - 15481510
Alignment:
Q  44 tttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaacacca 143  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||||||  ||||| || ||| ||||||| |||||||||||| |||||||||||    
T  15481611 tttaatttgcgaaagggaagttgtttcccacaatgggaaaactaattttgaccggtagattaaatagagaacatatttttatcatagaaactcaacacca 15481512  T
Q  144 ga 145  Q
    ||    
T  15481511 ga 15481510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 44 - 143
Target Start/End: Original strand, 15481042 - 15481141
Alignment:
Q  44 tttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaacacca 143  Q
    ||||||||||| |||| ||||||||||||   |||||||| |||||||||||| |||||| || ||| ||||||| ||||||||||||| ||||||||||    
T  15481042 tttaatttggggaagggaagttgtttcccgtcatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagactctcaacacca 15481141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 10420963 - 10421025
Alignment:
Q  83 aactaattttgaccattagataaagtagggaacatacttttatcatagacactcaacaccaga 145  Q
    |||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||    
T  10420963 aactaattttgaccattagataaactagataacatacttttatcatagacactcaacaccaga 10421025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 30808621 - 30808724
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactc 136  Q
    ||||||||||||  |||||||||| ||||||||||||| ||||||||  ||| |||||||||||||| |||||  ||| | | | |||||||||||||||    
T  30808621 ggtggcatttaaaatgggaaaggagagttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaatacattcttatcatagacactc 30808720  T
Q  137 aaca 140  Q
    ||||    
T  30808721 aaca 30808724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 45331502 - 45331395
Alignment:
Q  36 gggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacact 135  Q
    |||||||||||||  || ||||||  ||||||||||||| ||| ||||  ||| |||||||||||||| |||||  ||||| | | ||||||||||||||    
T  45331502 gggtggcatttaaaatgagaaaggggagttgtttcccaccatgagaaagttaaatttgaccattagattaagtaatgaacacattcttatcatagacact 45331403  T
Q  136 caacacca 143  Q
    ||||||||    
T  45331402 caacacca 45331395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 50709713 - 50709765
Alignment:
Q  91 ttgaccattagataaagtagggaacatacttttatcatagacactcaacacca 143  Q
    ||||| |||||||||||||| ||||||| ||||||||||||||||||||||||    
T  50709713 ttgactattagataaagtagagaacatagttttatcatagacactcaacacca 50709765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 50710435 - 50710359
Alignment:
Q  67 tttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaacacca 143  Q
    |||||||| ||||||||   ||| |||||||||||||||||||| ||||||   |||||||||||||||||||||||    
T  50710435 tttcccaccatgggaaagtaaatattgaccattagataaagtagagaacatgaatttatcatagacactcaacacca 50710359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 30809553 - 30809447
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactc 136  Q
    ||||||||||||  |||||||||  |||||||| |||| ||| ||||  ||| |||||||| ||||| |||||  ||||| | ||||||||||||| |||    
T  30809553 ggtggcatttaaaatgggaaaggggagttgttttccaccatgagaaagttaaatttgaccactagattaagtaatgaacacatttttatcatagactctc 30809454  T
Q  137 aacacca 143  Q
    |||||||    
T  30809453 aacacca 30809447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 53664242 - 53664315
Alignment:
Q  67 tttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaaca 140  Q
    |||||||| ||||||||   ||| |||||||||||||||| ||| ||||||  |||||||||||||||||||||    
T  53664242 tttcccaccatgggaaagtaaatattgaccattagataaaatagagaacatggttttatcatagacactcaaca 53664315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 53665080 - 53665028
Alignment:
Q  91 ttgaccattagataaagtagggaacatacttttatcatagacactcaacacca 143  Q
    |||||||||| ||||||||| ||||||  ||||||||||||||||||||||||    
T  53665080 ttgaccattaaataaagtagagaacatggttttatcatagacactcaacacca 53665028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 13856645 - 13856687
Alignment:
Q  91 ttgaccattagataaagtagggaacatacttttatcatagaca 133  Q
    |||||||||||||||||||| |||||||| |||||||||||||    
T  13856645 ttgaccattagataaagtagagaacatacctttatcatagaca 13856687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 25370507 - 25370577
Alignment:
Q  38 gtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagt 108  Q
    ||||||||||||||||||||||  |||| |||||||| |||||||| ||  || |||||||||||| ||||    
T  25370507 gtggcatttaatttgggaaaggctagttttttcccaccatgggaaagctttttctgaccattagatcaagt 25370577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 3847887 - 3847987
Alignment:
Q  38 gtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa-actaattttgaccattagataaagtagggaacatacttttatcatagacactc 136  Q
    ||||||||||||||||||||||| | || |||||||| ||||||||   |  ||||||||||||||| || ||  || |||| | |||||||||||||||    
T  3847887 gtggcatttaatttgggaaaggagacttttttcccaccatgggaaagtatttttttgaccattagatcaaatatagaccataatgttatcatagacactc 3847986  T
Q  137 a 137  Q
    |    
T  3847987 a 3847987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 232083 - 232028
Alignment:
Q  51 tgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaa 106  Q
    ||||||||| |||||||||||||| ||||||||   |||||| |||||||||||||    
T  232083 tgggaaagggaagttgtttcccaccatgggaaagtaaattttaaccattagataaa 232028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 34956313 - 34956388
Alignment:
Q  66 gtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaacac 141  Q
    |||||||| ||| |||||  ||||||||||| |||||| |||||  ||||| | ||||||||||||| ||||||||    
T  34956313 gtttcccattataggaaagttaattttgacccttagatcaagtaaagaacacatttttatcatagactctcaacac 34956388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 143
Target Start/End: Original strand, 45330564 - 45330671
Alignment:
Q  36 gggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacact 135  Q
    |||||| ||||||  |||||||||  ||||||||||||| |||| |||  ||| |||||||| ||||| |||||  ||| | | | ||||||||||| ||    
T  45330564 gggtggaatttaaaatgggaaaggggagttgtttcccaccatggaaaagttaaatttgaccactagattaagtaatgaatacattcttatcatagactct 45330663  T
Q  136 caacacca 143  Q
    ||||||||    
T  45330664 caacacca 45330671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 11417687 - 11417733
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  11417687 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaa 11417733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 11417985 - 11417939
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  11417985 ggtgtcatttaatttgggaaaggagagttctttcccaccatgggaaa 11417939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 26611331 - 26611285
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  26611331 ggtgtcatttaatttgggaaaggagagttttttcccaccatgggaaa 26611285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 29651380 - 29651334
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  29651380 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaa 29651334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 36865765 - 36865719
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  36865765 ggtgacatttaatttgggaaaggagagttctttcccaccatgggaaa 36865719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 47376852 - 47376898
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||||||||||||||||||||||  ||||||||||||  ||||||||    
T  47376852 ggtggcatttaatttgggaaaggggagttgtttcccatcatgggaaa 47376898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 47377646 - 47377600
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||||||||||||||||  ||||||||||||| ||||||||    
T  47377646 ggtgccatttaatttgggaaaggggagttgtttcccaccatgggaaa 47377600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 50709022 - 50709096
Alignment:
Q  67 tttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaacac 141  Q
    ||||||| ||| |||||  ||||||||||| |||||| |||||  ||||| | ||||||||||||| ||||||||    
T  50709022 tttcccattataggaaagttaattttgacccttagatcaagtaaagaacacatttttatcatagactctcaacac 50709096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 11680283 - 11680356
Alignment:
Q  44 tttaatttgggaaaggaaagttgtttcccactatgggaaaacta-attttgaccattagataaagtagggaaca 116  Q
    ||||||||||||||||  |||| |||||||| ||||||||  ||  ||||||||||||||| || |||||||||    
T  11680283 tttaatttgggaaaggttagttttttcccaccatgggaaagttagtttttgaccattagattaaatagggaaca 11680356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 11688562 - 11688635
Alignment:
Q  44 tttaatttgggaaaggaaagttgtttcccactatgggaaaacta-attttgaccattagataaagtagggaaca 116  Q
    ||||||||||||||||  |||| |||||||| ||||||||  ||  ||||||||||||||| || |||||||||    
T  11688562 tttaatttgggaaaggttagttttttcccaccatgggaaagttagtttttgaccattagattaaatagggaaca 11688635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 139
Target Start/End: Original strand, 34371476 - 34371564
Alignment:
Q  51 tgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaac 139  Q
    |||||||||  | ||||||||||| ||||||||  |  ||||| |||||||||  |||| | |||||| ||||||||| ||||||||||    
T  34371476 tgggaaaggggaattgtttcccaccatgggaaagttttttttgtccattagattgagtaagaaacataattttatcatggacactcaac 34371564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 45236008 - 45235916
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcata 129  Q
    |||| |||||||||||| |||||| |||| |||||||| ||||||||  ||||  || ||||||||| || |  |||||||| || |||||||    
T  45236008 ggtgccatttaatttggaaaaggagagttctttcccaccatgggaaagttaatcatgtccattagattaaatgaggaacatatttctatcata 45235916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 47326823 - 47326791
Alignment:
Q  51 tgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||||||||||||||||||||||| ||||||||    
T  47326823 tgggaaaggaaagttgtttcccaccatgggaaa 47326791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 47341619 - 47341587
Alignment:
Q  51 tgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||||||||||||||||||||||| ||||||||    
T  47341619 tgggaaaggaaagttgtttcccaccatgggaaa 47341587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 55514388 - 55514356
Alignment:
Q  51 tgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||||||||||||||||||||||| ||||||||    
T  55514388 tgggaaaggaaagttgtttcccaccatgggaaa 55514356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 36 - 289
Target Start/End: Complemental strand, 11469814 - 11469562
Alignment:
Q  36 gggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacact 135  Q
    ||||| |||||||||||||||||| |||||||||  ||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  11469814 gggtgacatttaatttgggaaagggaagttgtttttcaccatggaaaaactaattttgaccattagataaagtagagaacatacttttatcatagacatt 11469715  T
Q  136 caacaccagannnnnnnctcacactcaccactctcattcaacaccagattttcttcttgtcattcaaaccttatcagctcagaaaaattgattttgtatc 235  Q
    ||||||||||       | ||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||| || |||||||||||||||||    
T  11469714 caacaccagattttttcc-cacactcaccactctcattcaacaccagattttcttcctctcattcaaaccttattagcttaggaaaattgattttgtatc 11469616  T
Q  236 caatttgctacaaatgacaaatttgctacccaactctctttcttcccgtctctg 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11469615 caatttgctacaaatgacaaatttgctacccaactctctttcttcccgtttctg 11469562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 14925390 - 14925282
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactc 136  Q
    |||||| ||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  14925390 ggtggcgtttaatttggggaaggaaagttgtttcccaccatgggaaagctaattttgaccattagataaactagagaacatacttttatcatagacactc 14925291  T
Q  137 aacaccaga 145  Q
    |||||||||    
T  14925290 aacaccaga 14925282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 11469081 - 11469189
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactc 136  Q
    |||||| |||||||| ||||||| |||||||||||||| |||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  11469081 ggtggcgtttaatttaggaaagggaagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaacatacttttatcatagacactc 11469180  T
Q  137 aacaccaga 145  Q
    |||||||||    
T  11469181 aacaccaga 11469189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 145
Target Start/End: Original strand, 14924681 - 14924782
Alignment:
Q  44 tttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaacacca 143  Q
    |||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||| || || ||| ||||||| ||||||||||||||||||||||||    
T  14924681 tttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttaaattaaatagagaacatatttttatcatagacactcaacacca 14924780  T
Q  144 ga 145  Q
    ||    
T  14924781 ga 14924782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 36 - 145
Target Start/End: Original strand, 31787477 - 31787586
Alignment:
Q  36 gggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacact 135  Q
    ||||||| |||| | |||||| || |||||||||||||| |||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  31787477 gggtggcgtttagtatgggaatgggaagttgtttcccaccatggaaaagctaattttgaccattagataaagtagagaacatacttttatcatagagact 31787576  T
Q  136 caacaccaga 145  Q
    ||||| ||||    
T  31787577 caacatcaga 31787586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 31788300 - 31788216
Alignment:
Q  61 aagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaacaccaga 145  Q
    |||||||||||||| ||||||||  ||||||| ||||||||||||| ||| ||||||||||||| ||||||||||||||||||||    
T  31788300 aagttgtttcccaccatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccaga 31788216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 143
Target Start/End: Original strand, 7463414 - 7463521
Alignment:
Q  36 gggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacact 135  Q
    ||||||||||||   ||| ||||||||   ||||||||| |||||||| ||||||||||||||||||| || ||  ||||| | |||||||||||||  |    
T  7463414 gggtggcatttagcatggaaaaggaaaagagtttcccaccatgggaaagctaattttgaccattagattaaataaagaacacagttttatcatagaccat 7463513  T
Q  136 caacacca 143  Q
    ||||||||    
T  7463514 caacacca 7463521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 2687761 - 2687675
Alignment:
Q  51 tgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactca 137  Q
    |||||||||| | ||||||||||| ||||||||| || |||||||  |||||| || || |||||||| ||||||||||||| ||||    
T  2687761 tgggaaaggataattgtttcccaccatgggaaaattatttttgacagttagattaactaaggaacatagttttatcatagactctca 2687675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 7464118 - 7464012
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactc 136  Q
    ||||||||||||  ||| ||||| ||   ||||||||| ||||||||||||||||||||||| |||| || ||| ||||| |  ||||||||||||  ||    
T  7464118 ggtggcatttaacatggaaaagggaaagagtttcccaccatgggaaaactaattttgaccatcagattaactagagaacacaactttatcatagaccatc 7464019  T
Q  137 aacacca 143  Q
    |||||||    
T  7464018 aacacca 7464012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 11426882 - 11426959
Alignment:
Q  66 gtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaacacca 143  Q
    ||||||||| |||||||| ||||||||||||||||||| || ||  ||||| | |||||||||||||  |||||||||    
T  11426882 gtttcccaccatgggaaagctaattttgaccattagattaactaaagaacacagttttatcatagaccatcaacacca 11426959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 38618260 - 38618334
Alignment:
Q  67 tttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaacac 141  Q
    |||||||| ||||||||  ||| |||||||||||||| |||||| ||||| | | ||||||||||| ||||||||    
T  38618260 tttcccaccatgggaaagttaagtttgaccattagattaagtagtgaacacattcttatcatagactctcaacac 38618334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 42384202 - 42384101
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactc 136  Q
    ||||||||||| | |||||||||| | |||||||| |  ||||||||  |  || ||||||||||||  | || ||||||| ||||||||||||||||||    
T  42384202 ggtggcatttagtatgggaaaggatacttgtttcctatcatgggaaagttttttctgaccattagatttaataaggaacatgcttttatcatagacactc 42384103  T
Q  137 aa 138  Q
    ||    
T  42384102 aa 42384101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 49420098 - 49420150
Alignment:
Q  51 tgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagat 103  Q
    |||||||||||||||||||||||  |||||||| ||  |||||||||||||||    
T  49420098 tgggaaaggaaagttgtttcccatgatgggaaagctttttttgaccattagat 49420150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 11427516 - 11427449
Alignment:
Q  76 atgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaacacca 143  Q
    ||||||||||||||||||||||| |||| || ||| ||||| |  ||||||||||||  |||||||||    
T  11427516 atgggaaaactaattttgaccatcagattaactagagaacacaactttatcatagaccatcaacacca 11427449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 16270206 - 16270253
Alignment:
Q  36 gggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    ||||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  16270206 gggtgccatttaatttgggaaaggagagttctttcccaccatgggaaa 16270253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 23440914 - 23440867
Alignment:
Q  36 gggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    ||||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  23440914 gggtgccatttaatttgggaaaggagagttctttcccaccatgggaaa 23440867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 11032267 - 11032161
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactc 136  Q
    ||||||||||||  |||||||||  | | ||||||||| ||||||||  | | |||||||||||||| |||||  ||||| | | ||||||| ||| |||    
T  11032267 ggtggcatttaacatgggaaaggggaatagtttcccaccatgggaaagttgaatttgaccattagattaagtaatgaacacattcttatcatggactctc 11032168  T
Q  137 aacacca 143  Q
    |||||||    
T  11032167 aacacca 11032161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 141
Target Start/End: Complemental strand, 36388082 - 36387992
Alignment:
Q  51 tgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaacac 141  Q
    ||||||| || | |||||||||| ||||||||   |  || ||||||||||||  | || ||||||| |||||||||||||||||||||||    
T  36388082 tgggaaatgatatttgtttcccattatgggaattttttttctgaccattagatttaatatggaacatgcttttatcatagacactcaacac 36387992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 37889908 - 37889974
Alignment:
Q  66 gtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagac 132  Q
    ||||||||| |||||||| | ||||||||||||||||| || ||  ||||| | |||||||||||||    
T  37889908 gtttcccaccatgggaaagcgaattttgaccattagattaactaaagaacacagttttatcatagac 37889974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 51974437 - 51974483
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  51974437 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaa 51974483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 51987827 - 51987873
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||||||||||||||||||||||| | || |||||||| ||||||||    
T  51987827 ggtggcatttaatttgggaaaggagacttctttcccaccatgggaaa 51987873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 11031430 - 11031503
Alignment:
Q  36 gggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagta 109  Q
    |||||||||||||  |||||||||  | | ||||||||| ||||||||  ||| |||||||||||||| |||||    
T  11031430 gggtggcatttaacatgggaaaggggaatagtttcccaccatgggaaagttaaatttgaccattagattaagta 11031503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 29334214 - 29334306
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcata 129  Q
    |||||||||||   |||||| ||| ||||||||||||| ||||||||   ||||||  ||||||||| || ||  || |||||||||||||||    
T  29334214 ggtggcatttagcatgggaatggatagttgtttcccaccatgggaaagtaaattttacccattagatcaaataaagaccatacttttatcata 29334306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 141
Target Start/End: Complemental strand, 49611603 - 49611503
Alignment:
Q  42 catttaatttgggaaaggaaagttgtttcccactatgggaaaacta-attttgaccattagataaagtagggaacatacttttatcatagacactcaaca 140  Q
    ||||||||||||||||||  |||| |||||||  ||||||||| ||  ||||| ||||||||| || ||||||||| | ||||| ||| | | |||||||    
T  49611603 catttaatttgggaaaggctagttttttcccatcatgggaaaattagtttttggccattagattaaatagggaacacaattttaccatggtctctcaaca 49611504  T
Q  141 c 141  Q
    |    
T  49611503 c 49611503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 37 - 289
Target Start/End: Original strand, 12349967 - 12350218
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactc 136  Q
    |||||| |||||||||||||||| |||||||||||||| |||| |||||||||||| ||||||||||||||||  |||||| ||||||||||||||||||    
T  12349967 ggtggcgtttaatttgggaaagggaagttgtttcccaccatggaaaaactaattttaaccattagataaagtaaagaacatgcttttatcatagacactc 12350066  T
Q  137 aacaccagannnnnnnctcacactcaccactctcattcaacaccagattttcttcttgtcattcaaaccttatcagctcagaaaaattgattttgtatcc 236  Q
    |||||||||       | ||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||| || ||||||||||||||||||    
T  12350067 aacaccagattttttcc-cacactcaccactctcattcaacaccagattttcttcctctcattcaaaccttataagcttaggaaaattgattttgtatcc 12350165  T
Q  237 aatttgctacaaatgacaaatttgctacccaactctctttcttcccgtctctg 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12350166 aatttgctacaaatgacaaatttgctacccaactctctttcttcccgtttctg 12350218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 12350702 - 12350594
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactc 136  Q
    |||||| |||||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  12350702 ggtggcgtttaatttgggaaagggaaattgtttcccaccatgggaaacctaattttgaccattagataaggtagagaacatacttttatcatagacactc 12350603  T
Q  137 aacaccaga 145  Q
    |||||||||    
T  12350602 aacaccaga 12350594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 43924490 - 43924596
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactc 136  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| |||||| || ||| ||||||| |||||||||| ||||||    
T  43924490 ggtggcatttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcataaacactc 43924589  T
Q  137 aacacca 143  Q
    |||||||    
T  43924590 aacacca 43924596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 43925066 - 43924958
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactc 136  Q
    |||||| |||||||||||||||| |||||||||||||| ||| ||||  ||||||||||| |||||| || ||| ||||||| |||||||||||||||||    
T  43925066 ggtggcgtttaatttgggaaagggaagttgtttcccaccatgagaaagttaattttgaccgttagattaaatagagaacatatttttatcatagacactc 43924967  T
Q  137 aacaccaga 145  Q
    |||||||||    
T  43924966 aacaccaga 43924958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 43971302 - 43971386
Alignment:
Q  61 aagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaacaccaga 145  Q
    |||||||||||||| |||||||| |||||||||||||||| ||||||||| |||||||||||||||||||| |||||||| ||||    
T  43971302 aagttgtttcccaccatgggaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaacatcaga 43971386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 43972110 - 43972026
Alignment:
Q  61 aagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaacaccaga 145  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||| ||| ||||||||||||| ||||||||||||||||||||    
T  43972110 aagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccaga 43972026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 39257658 - 39257737
Alignment:
Q  61 aagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaaca 140  Q
    |||||||||||||| |||||||| |||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||    
T  39257658 aagttgtttcccaccatgggaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaaca 39257737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 38686357 - 38686409
Alignment:
Q  91 ttgaccattagataaagtagggaacatacttttatcatagacactcaacacca 143  Q
    |||||||||||||||||||| ||||||  ||||||||||||||||||||||||    
T  38686357 ttgaccattagataaagtagagaacatggttttatcatagacactcaacacca 38686409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 38687073 - 38687000
Alignment:
Q  67 tttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaaca 140  Q
    |||||||| ||||||||   ||| |||| ||||||||||||||| ||||||  |||||||||||||||||||||    
T  38687073 tttcccacaatgggaaagtaaatattgatcattagataaagtagagaacatgattttatcatagacactcaaca 38687000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 33801553 - 33801605
Alignment:
Q  91 ttgaccattagataaagtagggaacatacttttatcatagacactcaacacca 143  Q
    |||||||||| ||||||||| ||||||  ||||||||||||||||||||||||    
T  33801553 ttgaccattaaataaagtagagaacatggttttatcatagacactcaacacca 33801605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 15183847 - 15183790
Alignment:
Q  86 taattttgaccattagataaagtagggaacatacttttatcatagacactcaacacca 143  Q
    |||||||||||||||||||||||||  |||||  |||||||| |||||||||| ||||    
T  15183847 taattttgaccattagataaagtagaaaacatgattttatcacagacactcaaaacca 15183790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 33802391 - 33802318
Alignment:
Q  67 tttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaaca 140  Q
    |||||||| ||||||||   ||| |||||||||| ||||| ||| ||||||  |||||||||||||||||||||    
T  33802391 tttcccaccatgggaaagtaaatattgaccattaaataaaatagagaacatggttttatcatagacactcaaca 33802318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 39258448 - 39258391
Alignment:
Q  86 taattttgaccattagataaagtagggaacatacttttatcatagacactcaacacca 143  Q
    ||||||| ||||||||||||| ||  ||||||||||||| | ||||||||||||||||    
T  39258448 taattttaaccattagataaactaaagaacatacttttaccgtagacactcaacacca 39258391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 61454 - 61500
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||||||||||||||||||||||| | || |||||||| ||||||||    
T  61454 ggtggcatttaatttgggaaaggagacttctttcccaccatgggaaa 61500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 1365829 - 1365875
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||||||||||||||||||||||| | || |||||||| ||||||||    
T  1365829 ggtggcatttaatttgggaaaggagacttctttcccaccatgggaaa 1365875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 34992312 - 34992266
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  34992312 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaa 34992266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 41859310 - 41859356
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  41859310 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaa 41859356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 38337525 - 38337417
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactc 136  Q
    |||||| |||||||||||||||| |||||||||||||| |||||||| |||||||||||| |||||| || ||| ||||||| |||||||||||||||||    
T  38337525 ggtggcgtttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagacactc 38337426  T
Q  137 aacaccaga 145  Q
    |||||||||    
T  38337425 aacaccaga 38337417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 38336944 - 38337048
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactc 136  Q
    |||||||||||||||||| |||| |||||||||||||| |||||||| |||||||||||| |||||| || ||| ||||||| |||||||  ||||||||    
T  38336944 ggtggcatttaatttggggaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatc--agacactc 38337041  T
Q  137 aacacca 143  Q
    |||||||    
T  38337042 aacacca 38337048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 44022135 - 44022031
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagat-aaagtagggaacatacttttatcatagacact 135  Q
    |||||||||||   ||| |||||| |||||||| |||| |||||||||  || |||||||||||||| ||| |||| ||||||||||||||||| |||||    
T  44022135 ggtggcatttagcatggaaaaggagagttgttttccaccatgggaaaaaaaaatttgaccattagattaaactagg-aacatacttttatcatacacact 44022037  T
Q  136 caacac 141  Q
    ||||||    
T  44022036 caacac 44022031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 49287687 - 49287793
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactc 136  Q
    ||||| ||||||| | |||||| |||||||||||| |||||||||||| ||||||  ||  |||||| |||||  ||||||| | |||||||| || |||    
T  49287687 ggtgggatttaatataggaaagtaaagttgtttcctactatgggaaaattaatttaaacggttagattaagtatagaacatagtcttatcatacactctc 49287786  T
Q  137 aacacca 143  Q
    |||||||    
T  49287787 aacacca 49287793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 19132861 - 19132814
Alignment:
Q  36 gggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    ||||| |||||||||||||||||||||||| |||||||| ||||||||    
T  19132861 gggtgccatttaatttgggaaaggaaagttctttcccaccatgggaaa 19132814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 15450259 - 15450318
Alignment:
Q  71 ccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatag 130  Q
    |||| ||||||||  |||| ||||||||||||| |||||| ||||||| |||||||||||    
T  15450259 ccaccatgggaaagttaatcttgaccattagattaagtagagaacatatttttatcatag 15450318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 17226968 - 17227015
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaa 84  Q
    |||||||||||||||||||||||| | || |||||||| |||||||||    
T  17226968 ggtggcatttaatttgggaaaggagatttctttcccaccatgggaaaa 17227015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 19132562 - 19132609
Alignment:
Q  36 gggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    ||||| ||||||||||||||||||| |||| ||||| |||||||||||    
T  19132562 gggtgccatttaatttgggaaaggagagttctttcctactatgggaaa 19132609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 36750485 - 36750439
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  36750485 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaa 36750439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 42108370 - 42108407
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccac 74  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  42108370 ggtggcgtttaatttgggaaagggaagttgtttcccac 42108407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 12907 - 12801
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactc 136  Q
    |||||| ||||||||||| |||  |||||||||||||| ||||||||  ||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  12907 ggtggcgtttaatttggggaagtgaagttgtttcccaccatgggaaagttaattttgaccattagataaactagagaacatacttttatcatagacactc 12808  T
Q  137 aacacca 143  Q
    |||||||    
T  12807 aacacca 12801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 12184 - 12292
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactc 136  Q
    |||||| |||||||||||||||  |||||||||||||| ||| ||||| ||||||||||| |||||| || ||| ||||||| |||||||||||||||||    
T  12184 ggtggcgtttaatttgggaaagagaagttgtttcccaccatgagaaaattaattttgaccgttagattaaatagagaacatatttttatcatagacactc 12283  T
Q  137 aacaccaga 145  Q
    |||| ||||    
T  12284 aacatcaga 12292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 4554671 - 4554764
Alignment:
Q  51 tgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaacaccag 144  Q
    |||||||||||| |||||| |||| ||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4554671 tgggaaaggaaaattgttttccaccatgagaaagctaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccag 4554764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 4555438 - 4555331
Alignment:
Q  36 gggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacact 135  Q
    |||||||||||| | ||||||||| ||||||||||| || |||||||| |||||||||| | || |||||||| | ||||||||||||||| ||||||||    
T  4555438 gggtggcatttagtatgggaaagggaagttgtttcctaccatgggaaagctaattttgaacgttggataaagtggagaacatacttttatcgtagacact 4555339  T
Q  136 caacacca 143  Q
    ||||||||    
T  4555338 caacacca 4555331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 8040492 - 8040400
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcata 129  Q
    |||| ||||||||||||||||||||| || ||||||||  |||||||  ||||  || ||||||||| || ||||||||||| || |||||||    
T  8040492 ggtgccatttaatttgggaaaggaaatttctttcccaccgtgggaaagttaatcatgtccattagattaaatagggaacatatttctatcata 8040400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 26712422 - 26712364
Alignment:
Q  51 tgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagta 109  Q
    ||||||||| |||||||||||||| |||||||| |||||||| ||||| |||| |||||    
T  26712422 tgggaaagggaagttgtttcccaccatgggaaagctaattttaaccatcagatcaagta 26712364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 26982160 - 26982102
Alignment:
Q  51 tgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagta 109  Q
    ||||||||| |||||||||||||| |||||||| |||||||| ||||| |||| |||||    
T  26982160 tgggaaagggaagttgtttcccaccatgggaaagctaattttaaccatcagatcaagta 26982102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 17767639 - 17767546
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatag 130  Q
    ||||| ||||||| ||||||||||  |||||||||||| ||||||||    |||| ||||||||||| || ||  ||||||| |||||||||||    
T  17767639 ggtgggatttaatatgggaaaggatcgttgtttcccaccatgggaaagtagatttagaccattagattaactaaagaacatatttttatcatag 17767546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 2319265 - 2319312
Alignment:
Q  36 gggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    ||||||||||||||||||||||||  |||| |||||||| ||||||||    
T  2319265 gggtggcatttaatttgggaaaggctagttttttcccaccatgggaaa 2319312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 8204120 - 8204166
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  8204120 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaa 8204166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 9142047 - 9142093
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    ||||||||||| | ||||||||| |||||||||||||| ||||||||    
T  9142047 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaa 9142093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 15184065 - 15184019
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  15184065 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaa 15184019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 33002864 - 33002818
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  33002864 ggtgtcatttaatttgggaaaggagagttctttcccaccatgggaaa 33002818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 39950404 - 39950450
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  39950404 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaa 39950450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 4554820 - 4554865
Alignment:
Q  185 tttcttcttgtcattcaaaccttatcagctcagaaaaattgatttt 230  Q
    ||||||| | ||||||||||||||||||| ||| ||||||||||||    
T  4554820 tttcttcctctcattcaaaccttatcagcccaggaaaattgatttt 4554865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 137
Target Start/End: Complemental strand, 39167484 - 39167388
Alignment:
Q  41 gcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactca 137  Q
    |||||||||||||||||||| | || |||||||  |||||||||    |||| |||||||||| || ||  || |||| | ||||||||||||||||    
T  39167484 gcatttaatttgggaaaggagacttctttcccatcatgggaaaatatttttttaccattagatcaaatatagaccataatgttatcatagacactca 39167388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 27763413 - 27763521
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactc 136  Q
    |||| ||||||||||||| |||| |||||||||||||| | ||||||||||||||||||| |||||| || ||| ||||||| |||||||| ||||||||    
T  27763413 ggtgacatttaatttggggaagggaagttgtttcccaccaagggaaaactaattttgaccgttagattaaatagagaacatatttttatcaaagacactc 27763512  T
Q  137 aacaccaga 145  Q
    |||||||||    
T  27763513 aacaccaga 27763521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 24125972 - 24126018
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||||||||||||||||||||||  ||||||||||||| ||||||||    
T  24125972 ggtggcatttaatttgggaaaggggagttgtttcccaccatgggaaa 24126018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 3543113 - 3543065
Alignment:
Q  35 ggggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  3543113 ggggtgccatttaatttgggaaaggagagttttttcccaccatgggaaa 3543065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 7193338 - 7193384
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  7193338 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaa 7193384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 24126766 - 24126720
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||||||||||||||||||||||  ||||||||||||  ||||||||    
T  24126766 ggtggcatttaatttgggaaaggggagttgtttcccatcatgggaaa 24126720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 33480676 - 33480630
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  33480676 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaa 33480630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 3542819 - 3542860
Alignment:
Q  42 catttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    ||||||||||||||||||| |||| |||||||| ||||||||    
T  3542819 catttaatttgggaaaggagagttttttcccaccatgggaaa 3542860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 22582522 - 22582481
Alignment:
Q  42 catttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    ||||||||||||||||||| |||| |||||||| ||||||||    
T  22582522 catttaatttgggaaaggagagttctttcccaccatgggaaa 22582481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 22587353 - 22587312
Alignment:
Q  42 catttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    ||||||||||||||||||| |||| |||||||| ||||||||    
T  22587353 catttaatttgggaaaggagagttctttcccaccatgggaaa 22587312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 33479701 - 33479742
Alignment:
Q  42 catttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    ||||||||||||||||||| |||| |||||||| ||||||||    
T  33479701 catttaatttgggaaaggagagttatttcccaccatgggaaa 33479742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 4975696 - 4975804
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactc 136  Q
    |||||| |||| | |||||| || |||||||||||||| |||| ||| |||||||||||||||| ||||||||| |||||||||||||||||||| ||||    
T  4975696 ggtggcgtttagtatgggaatgggaagttgtttcccaccatggaaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactc 4975795  T
Q  137 aacaccaga 145  Q
    |||| ||||    
T  4975796 aacatcaga 4975804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 61 - 143
Target Start/End: Complemental strand, 4976529 - 4976447
Alignment:
Q  61 aagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaacacca 143  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||| ||| ||||||||||||| ||||||||||||||||||    
T  4976529 aagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacca 4976447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 61 - 143
Target Start/End: Complemental strand, 4994436 - 4994354
Alignment:
Q  61 aagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaacacca 143  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||| ||| ||||||||||||| ||||||||||||||||||    
T  4994436 aagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacca 4994354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 4993604 - 4993712
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactc 136  Q
    |||||| |||| | |||||| || ||||||||| |||| |||| ||| |||||||||||||||| ||||||||| |||||||||||||||||||| ||||    
T  4993604 ggtggcgtttagtatgggaatgggaagttgttttccaccatggaaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactc 4993703  T
Q  137 aacaccaga 145  Q
    |||| ||||    
T  4993704 aacatcaga 4993712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 37545676 - 37545782
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactc 136  Q
    ||||||||||||  | ||||||| |||||||||||||| ||||||||  ||| |||||||||||||| |||||  ||||| | | |||||||||||||||    
T  37545676 ggtggcatttaaaataggaaagggaagttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaacacattcttatcatagacactc 37545775  T
Q  137 aacacca 143  Q
    |||||||    
T  37545776 aacacca 37545782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 36719070 - 36718974
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagaca 133  Q
    ||||||||||| | |||||||||||| |||||||| || || ||||| |||||||| ||||||| || || || | |||||||||||||||||||||    
T  36719070 ggtggcatttagtatgggaaaggaaacttgtttcctaccataggaaagctaattttaaccattaaattaaataagaaacatacttttatcatagaca 36718974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 143
Target Start/End: Complemental strand, 41519959 - 41519867
Alignment:
Q  51 tgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaacacca 143  Q
    ||||||||| ||||| |||||||| ||||||||  |  |||||||| ||| ||||||||| ||||||||||||| ||||||||| ||||||||    
T  41519959 tgggaaagggaagttttttcccaccatgggaaagttttttttgaccgttaaataaagtagagaacatacttttaccatagacacccaacacca 41519867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 143
Target Start/End: Complemental strand, 42370984 - 42370892
Alignment:
Q  51 tgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaacacca 143  Q
    |||||| ||||||||||||||||| ||||||||   ||| ||| |||||||||||||| | ||| ||| ||||||||||||||||| ||||||    
T  42370984 tgggaatggaaagttgtttcccaccatgggaaagtaaatattggccattagataaagtggagaatatagttttatcatagacactcgacacca 42370892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 1271247 - 1271299
Alignment:
Q  53 ggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataa 105  Q
    ||||||||||||||||| |||||||||||||||||||||| ||| ||||||||    
T  1271247 ggaaaggaaagttgttttccactatgggaaaactaattttaaccgttagataa 1271299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 8536880 - 8536828
Alignment:
Q  91 ttgaccattagataaagtagggaacatacttttatcatagacactcaacacca 143  Q
    |||||||||||||||||||| ||||||  ||||||||||||||||||||||||    
T  8536880 ttgaccattagataaagtagagaacatggttttatcatagacactcaacacca 8536828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 42369701 - 42369749
Alignment:
Q  95 ccattagataaagtagggaacatacttttatcatagacactcaacacca 143  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  42369701 ccattagataaagtagagaacataattttatcatagacactcaacacca 42369749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 37546612 - 37546506
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactc 136  Q
    ||||||||||||  |||||||||  ||||||||||||  ||||||||  ||| |||||||| ||||| |||||  ||||| | | ||||| ||||| |||    
T  37546612 ggtggcatttaaaatgggaaaggggagttgtttcccatcatgggaaagttaaatttgaccactagattaagtaacgaacacattcttatcgtagactctc 37546513  T
Q  137 aacacca 143  Q
    |||||||    
T  37546512 aacacca 37546506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 41984727 - 41984793
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagat 103  Q
    |||||||||||||||||||||||  |||| |||| ||| |||||||| ||| || ||||||||||||    
T  41984727 ggtggcatttaatttgggaaaggctagttttttctcaccatgggaaagctatttctgaccattagat 41984793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 8536191 - 8536240
Alignment:
Q  91 ttgaccattagataaagtagggaacatacttttatcatagacactcaaca 140  Q
    ||||| |||||||||||||| ||||||  |||||||||||||||||||||    
T  8536191 ttgacgattagataaagtagagaacatgattttatcatagacactcaaca 8536240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 21472008 - 21471956
Alignment:
Q  31 aaatggggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  21472008 aaatagggtgccatttaatttgggaaaggagagttctttcccaccatgggaaa 21471956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 14573261 - 14573307
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  14573261 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaa 14573307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 21471017 - 21471063
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  21471017 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaa 21471063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 30545483 - 30545437
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| |||||||||||||||||| |||||||||||||  ||||||||    
T  30545483 ggtgccatttaatttgggaaagggaagttgtttcccatgatgggaaa 30545437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 129
Target Start/End: Complemental strand, 4479751 - 4479658
Alignment:
Q  36 gggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcata 129  Q
    ||||| ||||||||||||||||||| |||| |||| ||| ||||||||  ||||  || ||||||||| || |  |||||||| | ||||||||    
T  4479751 gggtgccatttaatttgggaaaggagagttctttctcaccatgggaaagttaatcatgtccattagattaaatgaggaacatattcttatcata 4479658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 34617667 - 34617724
Alignment:
Q  51 tgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagt 108  Q
    |||||||||| | ||||||||||| ||||||||  || ||||||||||||||| ||||    
T  34617667 tgggaaaggataattgtttcccaccatgggaaagttatttttgaccattagattaagt 34617724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 41042542 - 41042643
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaa-ctaattttgaccattagataaagtagggaacatacttttatcatagacact 135  Q
    |||||||||||||||| |||||||   || |||||||| |||||||||  |  ||||||||||||||| || ||  || |||| | ||||||||||||||    
T  41042542 ggtggcatttaatttgagaaaggaggcttctttcccaccatgggaaaatatttttttgaccattagatcaaatatagaccataatgttatcatagacact 41042641  T
Q  136 ca 137  Q
    ||    
T  41042642 ca 41042643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 45139692 - 45139793
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaa-ctaattttgaccattagataaagtagggaacatacttttatcatagacact 135  Q
    |||||||||||||||||||||||| | || ||| |||  |||||||||  |  ||||||||||||||| || ||  || |||| | ||||||||||||||    
T  45139692 ggtggcatttaatttgggaaaggagacttcttttccatcatgggaaaatatttttttgaccattagatcaaatatagaccataatgttatcatagacact 45139791  T
Q  136 ca 137  Q
    ||    
T  45139792 ca 45139793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 36390971 - 36391023
Alignment:
Q  51 tgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagat 103  Q
    ||||||||| |||||||||||||| ||||||||   |||||| ||||||||||    
T  36390971 tgggaaagggaagttgtttcccaccatgggaaagtaaattttaaccattagat 36391023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 44154276 - 44154312
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttccca 73  Q
    |||| |||||||||||||||||| |||||||||||||    
T  44154276 ggtgccatttaatttgggaaagggaagttgtttccca 44154312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 27599211 - 27599317
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactc 136  Q
    ||||||||||||  |||||||||  ||||||||||||| ||||||||  ||| |||||||||||||| |||||  ||||| | | |||||||||||||||    
T  27599211 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaacacattcttatcatagacactc 27599310  T
Q  137 aacacca 143  Q
    |||||||    
T  27599311 aacacca 27599317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 46757449 - 46757530
Alignment:
Q  62 agttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaacacca 143  Q
    |||||||| |||| ||| ||||   ||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  46757449 agttgttttccaccatgagaaagtaaatattgaccattagataaagtagagaacataattttatcatagacactcaacacca 46757530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 145
Target Start/End: Complemental strand, 46759311 - 46759202
Alignment:
Q  36 gggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacact 135  Q
    |||||||||||| | |||||||||  ||||||||||||  || | ||| ||||| |||||||||||||||||||| |||||||||| ||| ||| | |||    
T  46759311 gggtggcatttagtatgggaaaggggagttgtttcccatcatagcaaagctaatcttgaccattagataaagtagagaacatacttctattatacatact 46759212  T
Q  136 caacaccaga 145  Q
     |||||||||    
T  46759211 taacaccaga 46759202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 27600144 - 27600037
Alignment:
Q  36 gggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacact 135  Q
    |||||||||||||  |||||||||  ||||||||||||| ||||||||  ||| |||||||| ||||| |||||  ||||| | | ||||||||||| ||    
T  27600144 gggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagttaaatttgaccactagattaagtaatgaacacattcttatcatagactct 27600045  T
Q  136 caacacca 143  Q
    ||||||||    
T  27600044 caacacca 27600037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 38779614 - 38779565
Alignment:
Q  34 tggggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    ||||||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  38779614 tggggtgccatttaatttgggaaaggagagttctttcccaccatgggaaa 38779565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 668178 - 668225
Alignment:
Q  36 gggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    ||||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  668178 gggtgccatttaatttgggaaaggagagttctttcccaccatgggaaa 668225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 45887278 - 45887341
Alignment:
Q  36 gggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccatt 99  Q
    ||||||| ||||||||||||||||  |||| |||||||| |||||||| ||  |||||||||||    
T  45887278 gggtggcgtttaatttgggaaaggctagttttttcccaccatgggaaagctttttttgaccatt 45887341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 12732276 - 12732350
Alignment:
Q  66 gtttcccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatagacactcaaca 140  Q
    ||||||||| ||||||||   ||| ||||||||||||| | |||  ||||||| ||||||||||||| |||||||    
T  12732276 gtttcccaccatgggaaagtaaatattgaccattagatcatgtaaagaacatagttttatcatagactctcaaca 12732350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 17145622 - 17145668
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  17145622 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaa 17145668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 37468910 - 37468956
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  37468910 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaa 37468956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 37469053 - 37469007
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  37469053 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaa 37469007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 38778854 - 38778900
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  38778854 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaa 38778900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 41194513 - 41194559
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  41194513 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaa 41194559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 45888028 - 45887982
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||||||||||||||||||||||  |||| |||||||| ||||||||    
T  45888028 ggtggcatttaatttgggaaaggctagttttttcccaccatgggaaa 45887982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 7677852 - 7677811
Alignment:
Q  42 catttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    ||||||||||||||||||| |||| |||||||| ||||||||    
T  7677852 catttaatttgggaaaggagagttctttcccaccatgggaaa 7677811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 48259865 - 48259804
Alignment:
Q  38 gtggcatttaatttgggaaaggaaagttgtttcccactatgggaaaactaattttgaccatt 99  Q
    |||||||||||||||||||| |  |||| |||||||| |||||||||||  || ||||||||    
T  48259865 gtggcatttaatttgggaaatgttagttttttcccaccatgggaaaactttttctgaccatt 48259804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 35771293 - 35771253
Alignment:
Q  51 tgggaaaggaaagttgtttcccactatgggaaaactaattt 91  Q
    |||||||| ||||||||||||||| |||||||| |||||||    
T  35771293 tgggaaagcaaagttgtttcccaccatgggaaagctaattt 35771253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 29990 - 29938
Alignment:
Q  53 ggaaaggaaagttgtttcccactatgggaaaactaattttgaccattagataa 105  Q
    ||||||||||||||||| |||||||||||||||||||||| ||| ||||||||    
T  29990 ggaaaggaaagttgttttccactatgggaaaactaattttaaccgttagataa 29938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 36664 - 36620
Alignment:
Q  61 aagttgtttcccactatgggaaaactaattttgaccattagataa 105  Q
    |||||||||||||||||||||||||||||||||||  ||||||||    
T  36664 aagttgtttcccactatgggaaaactaattttgactgttagataa 36620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 130
Target Start/End: Complemental strand, 11932 - 11873
Alignment:
Q  71 ccactatgggaaaactaattttgaccattagataaagtagggaacatacttttatcatag 130  Q
    |||| ||||||||  |||| ||||||||||||| |||||| ||||||| |||||||||||    
T  11932 ccaccatgggaaagttaatcttgaccattagattaagtagagaacatatttttatcatag 11873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 208 - 162
Alignment:
Q  37 ggtggcatttaatttgggaaaggaaagttgtttcccactatgggaaa 83  Q
    |||| ||||||||||||||||||| |||| |||||||| ||||||||    
T  208 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaa 162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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