View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17761_low_54 (Length: 300)

Name: NF17761_low_54
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17761_low_54
NF17761_low_54
[»] chr8 (1 HSPs)
chr8 (18-300)||(3416321-3416603)


Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 3416603 - 3416321
Alignment:
Q  18 cagcaacaatactagaaactgaaatattcaatttagaaacatttgaggaacaagaaataagtagacttctttggtatataaattgctcgccatatatatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3416603 cagcaacaatactagaaactgaaatattcaatttagaaacatttgaggaacaagaaataagtagacttctttggtatataaattgcttgccatatatatt 3416504  T
Q  118 gctttgctgacaagtaactattattccacaaccattttttcttactacttcatggagcttggatttgccatacacttttctggtctcatgaagacgtgaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3416503 gctttgctgacaagtaactattattccacaaccattttttcttactacttcatggagcttggatttgccatacacttttctggtctcatgaagacgtgaa 3416404  T
Q  218 atctatcactacacaaaatatccctcgtcattctattgtattcaagcttaactacataacactcaatttgatcttcaacataa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3416403 atctatcactacacaaaatatccctcgtcattctattgtattcaagcttaactacataacaatcaatttgatcttcaacataa 3416321  T

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