View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_low_55 (Length: 299)
Name: NF17761_low_55
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 41219050 - 41219318
Alignment:
| Q |
14 |
gaagaatatccaaatggttatagaaacaaatgagttgaaagcaataagatgtggtaaagtctcat-ttgtgtgttggccgaagttacaatagtcacattg |
112 |
Q |
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| T |
41219050 |
gaagaatatccaaatggttatagaaacaaatgagttgaaagcaataagatgtggtaaagtctcatattgtgtgttggccgaagttacaatagtcacattg |
41219149 |
T |
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| Q |
113 |
aaccctcgaatatgttcgaagatctcgaacatatcttccagttctagggagaattcgcaaaactccgtttccatcgagaattaaatggagttttcccgta |
212 |
Q |
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| T |
41219150 |
aaccctcgaatatgttcgaagatcttgaacatatcttccagttctagggagaattcgcaaaactccgtttccatcgagaattaaatggagttttcccgta |
41219249 |
T |
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| Q |
213 |
tttcgacaggagaatctaacagaatccaaacctaaataatgtgctaaatgtagaaatgaagcatatatc |
281 |
Q |
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| T |
41219250 |
tttcgacaggagaatctaacagaatccaaacctaaataacgtgctaaatgtagaaatgaagcatatatc |
41219318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 13340782 - 13340832
Alignment:
| Q |
64 |
gtggtaaagtctcat-ttgtgtgttggccgaagttacaatagtcacattga |
113 |
Q |
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| T |
13340782 |
gtggtaaagtctcttattatgtgttggtcgaagttacaatagtcacattga |
13340832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 24499336 - 24499410
Alignment:
| Q |
67 |
gtaaagtctcat-ttgtgtgttggccgaagttacaatagtcacattgaaccctcgaatatgttcgaagatctcga |
140 |
Q |
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| T |
24499336 |
gtaaagtctcatattgtgtgttggtcgaagttacaataatcacattgaatcctcgaatatgttcgaagatctcga |
24499410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 39462312 - 39462183
Alignment:
| Q |
86 |
ttggccgaagttacaatagtcacattgaaccctcgaatatgttcgaagatctcgaacatatcttccagttctagggagaattcgcaaaactc------cg |
179 |
Q |
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| T |
39462312 |
ttggccaaagtgacagtagtcacattgaatcctcgaatattttcgaagatctaaaaataatcttccacttctggggataatttgcaaaactcccttctcg |
39462213 |
T |
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| Q |
180 |
tttccatcgagaattaaatggagttttccc |
209 |
Q |
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| T |
39462212 |
attccatcgataattgaatggagttttccc |
39462183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 39409177 - 39409229
Alignment:
| Q |
181 |
ttccatcgagaattaaatggagttttcccgtatttcgacaggagaatctaaca |
233 |
Q |
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| T |
39409177 |
ttccatcgagaattgaatggagtttccccgtatttcgactagagaatctaaca |
39409229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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