View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_low_57 (Length: 287)
Name: NF17761_low_57
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_low_57 |
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| [»] scaffold1463 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 12 - 267
Target Start/End: Complemental strand, 50230810 - 50230555
Alignment:
| Q |
12 |
agaagtataagtttcatgagctttactggctatattatatgacatgatcaaacnnnnnnntgattannnnnnn-cttatttttgtgtgttgggcaggcaa |
110 |
Q |
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| T |
50230810 |
agaagtattagtttcattagcttcactggctatattatatgatatgatcaaacaagaaa-tgattatttttttgcttatttttgtgtgttgagcagacaa |
50230712 |
T |
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| Q |
111 |
tgtattttgaagagatactaagagaggcttactctcatcgagctgttgaagggattataatgtttgtaggtccaacgcaagccggtttcatcaacacaca |
210 |
Q |
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| T |
50230711 |
tgtattttgaagagatactaagagaggcttactctcatccagctgttgaagggattataatgtttgtaggtccagcgcaagccgatttcatcaacacaca |
50230612 |
T |
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| Q |
211 |
acttgcagatgcaaattttaaaaatactccaaccggagacgctgtggacaagcttat |
267 |
Q |
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| T |
50230611 |
acttgcagatgcaaattttaaaaatactccaaccggagacgttgtggacaagcttat |
50230555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 6e-80; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 85 - 267
Target Start/End: Complemental strand, 48066138 - 48065956
Alignment:
| Q |
85 |
cttatttttgtgtgttgggcaggcaatgtattttgaagagatactaagagaggcttactctcatcgagctgttgaagggattataatgtttgtaggtcca |
184 |
Q |
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| T |
48066138 |
cttatttttgtgtgttgggcaggcaatgtattttgaagagatactaagagaggcttactctcatccagatgttgaagggattataatgtttgtaggtcca |
48066039 |
T |
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| Q |
185 |
acgcaagccggtttcatcaacacacaacttgcagatgcaaattttaaaaatactccaaccggagacgctgtggacaagcttat |
267 |
Q |
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| T |
48066038 |
gcacaagccggtttcaccaacacacaacttgcagacgcaaattttcaaaatactccaaccggagacgttgtggacaagcttat |
48065956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 112 - 261
Target Start/End: Complemental strand, 48105716 - 48105567
Alignment:
| Q |
112 |
gtattttgaagagatactaagagaggcttactctcatcgagctgttgaagggattataatgtttgtaggtccaacgcaagccggtttcatcaacacacaa |
211 |
Q |
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| T |
48105716 |
gtattttgaagaggtactaagagaggcttattctcatccagcagttgaagggattataatgtttgctggtccagcacaagctggtttcaacagtacactt |
48105617 |
T |
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| Q |
212 |
cttgcagatgcaaattttaaaaatactccaaccggagacgctgtggacaa |
261 |
Q |
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| T |
48105616 |
cttgcagatacaaatttccaaactactccaactggacaagttgtggacaa |
48105567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 97 - 258
Target Start/End: Complemental strand, 48061948 - 48061787
Alignment:
| Q |
97 |
tgttgggcaggcaatgtattttgaagagatactaagagaggcttactctcatcgagctgttgaagggattataatgtttgtaggtccaacgcaagccggt |
196 |
Q |
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| T |
48061948 |
tgtttggcaggcagagtactttgaagagattcttagagaaggttactctcatcctgctgtgcaagggattgtaatgtttgtgggtccagcacaggctggt |
48061849 |
T |
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| Q |
197 |
ttcatcaacacacaacttgcagatgcaaattttaaaaatactccaaccggagacgctgtgga |
258 |
Q |
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| T |
48061848 |
ttcaacagtacactccttgcagatgcagattttcaaaatactccaactggagacgttgtgga |
48061787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 264
Target Start/End: Complemental strand, 48098961 - 48098785
Alignment:
| Q |
88 |
atttttgtgtgttgggcaggcaatgtattttgaagagatactaagagaggcttactctcatcgagctgttgaagggattataatgtttgtaggtccaacg |
187 |
Q |
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| T |
48098961 |
atttttttttgttgggcaggcagagtatcttgaagacgtgctaagagaggcttactctcatccagctgttcaagggattataatttttgctggtccggaa |
48098862 |
T |
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| Q |
188 |
caagccggtttcatcaacacacaacttgcagatgcaaattttaaaaatactccaaccggagacgctgtggacaagct |
264 |
Q |
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| T |
48098861 |
caagttggtttcggcgatacattactcgcagatgcaaattttcgaaatactccaactggagacattgtggacaagct |
48098785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 111 - 267
Target Start/End: Original strand, 1477 - 1632
Alignment:
| Q |
111 |
tgtattttgaagagatactaagagaggcttactctcatcgagctgttgaagggattataatgtttgtaggtccaacgcaagccggtttcatcaacacaca |
210 |
Q |
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| T |
1477 |
tgtattttgaagagatactaagagaagcttactcttatccagctgttgaagggattataatgtttgtaggtccagcgcaagccggtttcatcaacacgca |
1576 |
T |
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| Q |
211 |
acttgcagatgcaaattttaaaaatactccaaccggagacgctgtggacaagcttat |
267 |
Q |
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| T |
1577 |
acttgcagatgcaaattttaaaaatac-acaaccagagacgttgtggacaagcttat |
1632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 1395 - 1447
Alignment:
| Q |
12 |
agaagtataagtttcatgagctttactggctatattatatgacatgatcaaac |
64 |
Q |
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| T |
1395 |
agaagtattagattcattagcttcactgtctatattatatgacatgatcaaac |
1447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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