View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_low_64 (Length: 268)
Name: NF17761_low_64
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_low_64 |
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| [»] scaffold0831 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 6 - 260
Target Start/End: Original strand, 44185384 - 44185620
Alignment:
| Q |
6 |
aaaagtgacaaggttagtaaccgtagctatattcctgatgaaatttcgttttctattctttccaaattacccctcaaatctctcaatcgatttacttgtg |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44185384 |
aaaagtgacaaggttagtaaccgtagctatattcctgatgaaatttcgttttctattctttccaaattacccctcaaat------------------gtg |
44185465 |
T |
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| Q |
106 |
ctccaaatcatggtctcttttatttcatgcaattgttccgcaccaatttcatatctatgcatcgctcattgtacaatcgcacctatctcttcctaaatat |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44185466 |
ctccaaatcatggtctcttttatttcatgcaattgttccacaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaatat |
44185565 |
T |
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| Q |
206 |
taaggagatatcaccacatcctcgagacggtttcaatctgtatttgctctctgct |
260 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44185566 |
taaggagatatcgccacatcctcgagacggttccaatctgtatttgctctctgct |
44185620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 6 - 260
Target Start/End: Original strand, 4875920 - 4876189
Alignment:
| Q |
6 |
aaaagtgacaaggttagtaaccgtagctatattcctgatgaaatttcgttttctattctttccaaattacccctcaaatctctcaatcgatttacttgtg |
105 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| |||| |
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| T |
4875920 |
aaaagtgacaaggttagtaaccgtagctatattcccgatgacatttccttttctattctttccaaattacccctccaatctctcaattgatttacatgtg |
4876019 |
T |
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| Q |
106 |
-ctccaaatcatggtctctttt--------------atttcatgcaattgttccgcaccaatttcatatctatgcatcgctcattgtacaatcgcaccta |
190 |
Q |
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| T |
4876020 |
cctccaaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgcaccaatttcatatctatgcatcgatcattgtacgatcacactta |
4876119 |
T |
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| Q |
191 |
tctcttcctaaatattaaggagatatcaccacatcctcgagacggtttcaatctgtatttgctctctgct |
260 |
Q |
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| T |
4876120 |
tctctttctaaatattaaggagatattgccacatccacgagacggttccaatctgtatttgctctctgct |
4876189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 1326328 - 1326563
Alignment:
| Q |
6 |
aaaagtgacaaggttagtaaccgtagctatattcctgatgaaatttcgttttctattctttccaaattacccctcaaatctctcaatcgatttacttgtg |
105 |
Q |
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||||||||||||||||| ||| |||||||||| ||||||| ||||| || |||||||||||||||||||| |||||||||||||| |||||||| |||| |
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| T |
1326328 |
aaaagtgacaaggttagcaacactagctatattgctgatgacatttccttctctattctttccaaattacctctcaaatctctcaaacgatttacgtgtg |
1326427 |
T |
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| Q |
106 |
c-tccaaatcatggtctctt--------------ttatttcatgcaattgttccgcaccaatttcatatctatgcatcgctcattgtacaatcgcaccta |
190 |
Q |
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| T |
1326428 |
catgcaaaccatagtctcttttatttcaaaacccttatttcatgcctatgtttcgcaccaatttcatatctatgcattgttcactgtacaatgacacata |
1326527 |
T |
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| Q |
191 |
tctcttcctaaatattaaggagatatcaccacatcc |
226 |
Q |
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| T |
1326528 |
tctcttccttaatataaaggagatattgccacatcc |
1326563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 6 - 260
Target Start/End: Original strand, 5387512 - 5387781
Alignment:
| Q |
6 |
aaaagtgacaaggttagtaaccgtagctatattcctgatgaaatttcgttttctattctttccaaattacccctcaaatctctcaatcgatttacttgtg |
105 |
Q |
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||||||||||||||||||||| ||| ||||||| | ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5387512 |
aaaagtgacaaggttagtaacagtaactatatttccgatgacatttccttttctattctttccaaattacccctcaaatctctcaatcgatttacctgtg |
5387611 |
T |
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| Q |
106 |
-ctccaaatcatggtctctttt--------------atttcatgcaattgttccgcaccaatttcatatctatgcatcgctcattgtacaatcgcaccta |
190 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| |
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| T |
5387612 |
cctccaaatcttggtctcttttatttcaaaaccctaatttcatgcaattgttccgcaccaatttcatatttatgcatcgctcattgtatgatcacacctt |
5387711 |
T |
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| Q |
191 |
tctcttcctaaatattaaggagatatcaccacatcctcgagacggtttcaatctgtatttgctctctgct |
260 |
Q |
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|||| ||||| |||| |||||||||| |||||||||| ||| |||| |||||||||||||||||||||| |
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| T |
5387712 |
tctcatcctatatataaaggagatattgccacatcctcaagatggttccaatctgtatttgctctctgct |
5387781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0831 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0831
Description:
Target: scaffold0831; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 2135 - 2047
Alignment:
| Q |
127 |
atttcatgcaattgttccgcaccaatttcatatctatgcatcgctcattgtacaatcgcacctatctcttcctaaatattaaggagata |
215 |
Q |
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| T |
2135 |
atttcatgaaaatgtttcgcaacaatttcatatttatgcatcgatcattgtacaatgacacatgtcttttcctaaatataaaggagata |
2047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0831; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 2211 - 2146
Alignment:
| Q |
66 |
tccaaattacccctcaaatctctcaatcgatttacttgtgc-tccaaatcatggtctcttttattt |
130 |
Q |
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| T |
2211 |
tccaaactacctcttaaatctctcaagcgatttacttgtgcatgcaagtcatggtctcttttattt |
2146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 26531587 - 26531664
Alignment:
| Q |
139 |
tgttccgcaccaatttcatatctatgcatcgctcattgtacaatcgcacctatctcttcctaaatattaaggagatat |
216 |
Q |
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| T |
26531587 |
tgttccgcaaaaatttcatatctatgcatcagtcattgtacaacaacacttatctctttctaaatataaaggagatat |
26531664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 27183114 - 27183166
Alignment:
| Q |
81 |
aaatctctcaatcgatttacttgtgct-ccaaatcatggtctcttttatttca |
132 |
Q |
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| T |
27183114 |
aaatctctcaagcgatttacttgtgtttccaaatcatggtctcttttatttca |
27183166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 27231171 - 27231119
Alignment:
| Q |
81 |
aaatctctcaatcgatttacttgtgct-ccaaatcatggtctcttttatttca |
132 |
Q |
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| T |
27231171 |
aaatctctcaagcgatttacttgtgtttccaaatcatggtctcttttatttca |
27231119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 26531509 - 26531564
Alignment:
| Q |
76 |
ccctcaaatctctcaatcgatttacttgtgc-tccaaatcatggtctcttttattt |
130 |
Q |
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|||||||||||||||| || ||||||||||| | |||||||||||||||||||||| |
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| T |
26531509 |
ccctcaaatctctcaagcggtttacttgtgcgtgcaaatcatggtctcttttattt |
26531564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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