View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17761_low_72 (Length: 249)
Name: NF17761_low_72
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_low_72 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 12350198 - 12350417
Alignment:
| Q |
1 |
ctctctttcttcccgtttctgtttctctacaaatgacaaataattaaacataaataaattaaaacataacatcaatggggtttgagtttgtatccaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12350198 |
ctctctttcttcccgtttctgtttctctacaaatgacaaataattaaacataaataaattaaaacataacatcaatggagtttgagtttgtatccaattt |
12350297 |
T |
|
| Q |
101 |
gcta-cccatacaccatnnnnnnnccattcatacaaaaattccattgagtttgttgcttctttctaattcctgaaggcaaatcccccaagctgaaaaacc |
199 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
12350298 |
gctaccccatacaccataaaaaaaccattcatacaaaaattccattgagtttgttgcttctttctaattcctgaaggcaaatcccacaaactgaaaaacc |
12350397 |
T |
|
| Q |
200 |
acacccaaatccaatccaag |
219 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
12350398 |
acacccaaatccaatccaag |
12350417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 11469582 - 11469362
Alignment:
| Q |
1 |
ctctctttcttcccgtttctgtttctctacaaatgacaaataattaaacataaataaattaaaacataacatcaatggggtttgagtttgtatccaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11469582 |
ctctctttcttcccgtttctgtttctctacaaatgacaaataattaaacataaataaattaaaacataacatcaatggggtttgagtttgtatccaattt |
11469483 |
T |
|
| Q |
101 |
gcta-cccatacaccat-nnnnnnnccattcatacaaaaattccattgagtttgttgcttctttctaattcctgaaggcaaatcccccaagctgaaaaac |
198 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
11469482 |
gctaccccatacaccataaaaaaaatcattcatacaaaaattccattgagtttgttgcttctttctaattcctgaaggcaaatccctcaaactgaaaaac |
11469383 |
T |
|
| Q |
199 |
cacacccaaatccaatccaag |
219 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
11469382 |
cacacccaaatccaatccaag |
11469362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 6247287 - 6247067
Alignment:
| Q |
1 |
ctctctttcttcccgtttctgtttctctacaaatgacaaataattaaacataaataaattaaaacataacatcaatggggtttgagtttgtatccaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6247287 |
ctctctttcttcccgtttctgtttctctacaaatgacaaataattaaacataaataaattaaaacataacatcaatggggtttgagtttgtatcaaattt |
6247188 |
T |
|
| Q |
101 |
gcta-cccatacaccatnnnnnnnccattc--atacaaaaattccattgagtttgttgcttctttctaattcctgaaggcaaatcccccaagctgaaaaa |
197 |
Q |
| |
|
|||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
6247187 |
gctaccccatacaccataaaaaaaccattcatatacaaaaattccattgagtttgttgcttctttctaattcctgaaggcaaatcccccaaact-aaaaa |
6247089 |
T |
|
| Q |
198 |
ccacacccaaatccaatccaag |
219 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
6247088 |
acacacccaaatccaatccaag |
6247067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 22499771 - 22499722
Alignment:
| Q |
24 |
tctctacaaatgacaaataattaaacataaataaattaaaacataacatca |
74 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
22499771 |
tctctacaagtgacaaataattaaacatgaataaattaaaac-taacatca |
22499722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 22499577 - 22499528
Alignment:
| Q |
170 |
ctgaaggcaaatcccccaagctgaaaaaccacacccaaatccaatccaag |
219 |
Q |
| |
|
|||||| ||| |||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
22499577 |
ctgaagacaattcccccaaactgaaaaaccacacccaaattcaatccaag |
22499528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 4554993 - 4555182
Alignment:
| Q |
22 |
tttctctacaaatgacaaataattaaacataaataaattaaaacataacatcaatggggtttgagtttgtatccaatttgctaccc-atacaccatnnnn |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
4554993 |
tttctctacaaatgacaaataattaaacataaataaattaaaacataacatcaatggggtttgagtttgtatccaatttgctaccccatacacgataaaa |
4555092 |
T |
|
| Q |
121 |
nnnccattcatacaaaaattccattgagtttgttgcttctttctaattcctgaaggcaaatcccccaagctgaaaaaccacacccaaatccaatccaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
4555093 |
aaaccattcatacaaaaattccattgagtttgttgcttctttctaattcctgaaggca--------aaattgaaaaaccacacccaaatccaatccaa |
4555182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 34034613 - 34034662
Alignment:
| Q |
170 |
ctgaaggcaaatcccccaagctgaaaaaccacacccaaatccaatccaag |
219 |
Q |
| |
|
|||||| ||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34034613 |
ctgaagacaattcccccaaactgaaaaaccacacccaaatccaatccaag |
34034662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 34034419 - 34034468
Alignment:
| Q |
24 |
tctctacaaatgacaaataattaaacataaataaattaaaacataacatca |
74 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
34034419 |
tctctacaagtgacaaataattaaacatgaataaattaaaac-taacatca |
34034468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University