View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_low_74 (Length: 248)
Name: NF17761_low_74
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_low_74 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 22042243 - 22042475
Alignment:
| Q |
16 |
aaaatatgatttacggtttggtagttttgtgcttctgctgtgaaagggagggaaatcatcagtggaatgaagtgtccttccaagagtcattatgaatcgg |
115 |
Q |
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| T |
22042243 |
aaaatatgatttacggttcggtagttttgtgcttctgctgtgaaagggagggaaatcatcagtggaatgaagtgtccttccaagagtcattatgaatcgg |
22042342 |
T |
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| Q |
116 |
ctttggccaacatagtttagcacaatttttctaatgccttcaaaatggtaaaaatctcttatggcagtccatcctgtagttagtaaagggagagtttctg |
215 |
Q |
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| T |
22042343 |
gtttggccaacatagtttagcacaatttgtctgatgccttcaaaatggtaaaaatctcttatggcagttcatcctgtagttagtaaagggagagtttctg |
22042442 |
T |
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| Q |
216 |
aattgttgaaagttacatggtgactttttccat |
248 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
22042443 |
aattgttgaaagttgcatggtgactttttccat |
22042475 |
T |
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