View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17761_low_77 (Length: 244)
Name: NF17761_low_77
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17761_low_77 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 42010583 - 42010365
Alignment:
| Q |
16 |
attagaacaaatttcacaaaggagtctcacctggaaggtaagaaggaagtcctctctcaacctgcaagnnnnnnnncctaggaaaaaagctactaatact |
115 |
Q |
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| T |
42010583 |
attagaacaaatttcacaaaggagtctcacctggaaggtaagaaggaagtcctctctcaacctgcaagctttttttcctaggaaaaaagctactaatact |
42010484 |
T |
|
| Q |
116 |
aggcaatagaattttcttccctttttccaacttcctcgcctccatgttttgtggaagtgaatgctgcttttgaatcttgtaaagctgaggagataaacgt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42010483 |
aggcaatagaattttcttccctttttccaacttcctcgcctccatgttttgtggaagtgaatgctgcttttgaatcttgtaaagccgaggagataaacgt |
42010384 |
T |
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| Q |
216 |
gatgaagacgatgatgatg |
234 |
Q |
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||||||||||||||||||| |
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| T |
42010383 |
gatgaagacgatgatgatg |
42010365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 1245921 - 1245710
Alignment:
| Q |
16 |
attagaacaaatttcacaaaggagtctcacctggaaggtaagaaggaagtcctctctcaacctgcaagnnnnnnnncctaggaaaaaagctactaatact |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
1245921 |
attagaacaaatttcacaaaggagtctcacctggaaggtaagaaggaagtcctctctcaacctgcaagctttttttcctaggaaaaaggctactaatact |
1245822 |
T |
|
| Q |
116 |
aggcaatagaattttcttccctttttccaacttcctcgcctccatgttttgtggaagtgaatgctgcttttgaatcttgtaaagctgaggagataaacgt |
215 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1245821 |
aggcattagaattttcttccctttatccaacttcctcgcctccatgttttgtggaagtgaatgctgcttttgaatcttgtaaagccgaggagataaacgt |
1245722 |
T |
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| Q |
216 |
gatgaagacgat |
227 |
Q |
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|||||||||||| |
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| T |
1245721 |
gatgaagacgat |
1245710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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