View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17761_low_80 (Length: 226)

Name: NF17761_low_80
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17761_low_80
NF17761_low_80
[»] chr6 (5 HSPs)
chr6 (18-226)||(20770864-20771067)
chr6 (108-169)||(6921063-6921124)
chr6 (108-171)||(6934946-6935009)
chr6 (124-169)||(17369951-17369996)
chr6 (108-136)||(6954231-6954259)
[»] chr4 (4 HSPs)
chr4 (78-169)||(53775113-53775204)
chr4 (114-163)||(3560662-3560711)
chr4 (106-186)||(11970717-11970792)
chr4 (105-155)||(3558067-3558117)
[»] chr7 (9 HSPs)
chr7 (94-153)||(14076956-14077015)
chr7 (94-153)||(14386984-14387043)
chr7 (108-155)||(1985668-1985715)
chr7 (106-157)||(22063926-22063977)
chr7 (109-208)||(22064334-22064428)
chr7 (106-157)||(22100777-22100828)
chr7 (114-163)||(19350803-19350852)
chr7 (106-155)||(22081148-22081197)
chr7 (123-155)||(18322664-18322696)
[»] chr5 (1 HSPs)
chr5 (99-157)||(18964540-18964598)
[»] chr2 (5 HSPs)
chr2 (108-190)||(5436561-5436638)
chr2 (114-169)||(20712266-20712319)
chr2 (121-169)||(18913265-18913313)
chr2 (116-157)||(14515176-14515217)
chr2 (121-189)||(18908517-18908580)
[»] scaffold0097 (1 HSPs)
scaffold0097 (114-169)||(16105-16158)
[»] scaffold0867 (1 HSPs)
scaffold0867 (106-157)||(4404-4455)
[»] chr3 (1 HSPs)
chr3 (115-163)||(32578567-32578615)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 20771067 - 20770864
Alignment:
Q  18 tatataaaaagagaactgaaaaaagttaacaattaagatagttaatcattcaccaatacgatacgatcaagtcgaaactatcatatgaattaacacaaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||    
T  20771067 tatataaaaagagaactgaaaaaagttaacaattaagatagttaatcattcaccaatacgat-----caagtcgaaactatcatatgaattaacacaaat 20770973  T
Q  118 tcaaacaagtaaatcatcgaagaggaacttactttcaacaggttgataccaaaccaaactttcaacataatccttagcactataccaccaaatttcatag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20770972 tcaaacaagtaaatcatcgaagaggaacttactttcaacaggtcgataccaaaccaaactttcaacataatccttagcactataccaccaaatttcatag 20770873  T
Q  218 gtactttca 226  Q
    |||||||||    
T  20770872 gtactttca 20770864  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 6921063 - 6921124
Alignment:
Q  108 taacacaaattcaaacaagtaaatcatcgaagaggaacttactttcaacaggttgataccaa 169  Q
    ||||||||||||||||||||||||||||||| |  ||||||||||||| | || ||||||||    
T  6921063 taacacaaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaa 6921124  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 6934946 - 6935009
Alignment:
Q  108 taacacaaattcaaacaagtaaatcatcgaagaggaacttactttcaacaggttgataccaaac 171  Q
    ||||||||||||||||||||||||||| |||||| || |||| ||||| | || ||||||||||    
T  6934946 taacacaaattcaaacaagtaaatcattgaagagaaaattaccttcaagaagtcgataccaaac 6935009  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 17369996 - 17369951
Alignment:
Q  124 aagtaaatcatcgaagaggaacttactttcaacaggttgataccaa 169  Q
    |||||||||||||||||| ||||||||||||||| || ||||||||    
T  17369996 aagtaaatcatcgaagagtaacttactttcaacaagtagataccaa 17369951  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 136
Target Start/End: Original strand, 6954231 - 6954259
Alignment:
Q  108 taacacaaattcaaacaagtaaatcatcg 136  Q
    |||||||||||||||||||||||||||||    
T  6954231 taacacaaattcaaacaagtaaatcatcg 6954259  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 53775204 - 53775113
Alignment:
Q  78 atacgatcaagtcgaaactatcatatgaattaacacaaattcaaacaagtaaatcatcgaagaggaacttactttcaacaggttgataccaa 169  Q
    |||| ||||| || |||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||    
T  53775204 atacaatcaaatcaaaactatcatataaattaacacaaattcaaacaagtaaatcttggaagaggaacttactttcaacacgttgataccaa 53775113  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 3560662 - 3560711
Alignment:
Q  114 aaattcaaacaagtaaatcatcgaagaggaacttactttcaacaggttga 163  Q
    ||||||||||||||||| || |||||||||||||||||||||||| ||||    
T  3560662 aaattcaaacaagtaaaccaacgaagaggaacttactttcaacagattga 3560711  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 11970717 - 11970792
Alignment:
Q  106 attaacacaaattcaaacaagtaaatcatcgaagaggaacttactttcaacaggttgataccaaaccaaactttcaacata 186  Q
    |||| |||||||||||||||||||||  ||| |||| |||||||||||||||     |||| ||||||| |||||||||||    
T  11970717 attatcacaaattcaaacaagtaaattgtcgtagagaaacttactttcaaca-----atacaaaaccaagctttcaacata 11970792  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 3558117 - 3558067
Alignment:
Q  105 aattaacacaaattcaaacaagtaaatcatcgaagaggaacttactttcaa 155  Q
    |||| ||| |||||||||||||||||  || ||||||||||||||||||||    
T  3558117 aatttacataaattcaaacaagtaaacgatagaagaggaacttactttcaa 3558067  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 14077015 - 14076956
Alignment:
Q  94 actatcatatgaattaacacaaattcaaacaagtaaatcatcgaagaggaacttactttc 153  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  14077015 actatcatatgaattaacacagattcaaacatgtaaatcatcgaagaggaacttactttc 14076956  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 14387043 - 14386984
Alignment:
Q  94 actatcatatgaattaacacaaattcaaacaagtaaatcatcgaagaggaacttactttc 153  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  14387043 actatcatatgaattaacacagattcaaacatgtaaatcatcgaagaggaacttactttc 14386984  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 1985668 - 1985715
Alignment:
Q  108 taacacaaattcaaacaagtaaatcatcgaagaggaacttactttcaa 155  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||    
T  1985668 taacacaaattcaaacaagtaaatcatcgaagagaaacttaccttcaa 1985715  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 22063977 - 22063926
Alignment:
Q  106 attaacacaaattcaaacaagtaaatcatcgaagaggaacttactttcaaca 157  Q
    |||| |||||||||||||||||||||||| | ||||||||||||||||||||    
T  22063977 attagcacaaattcaaacaagtaaatcattgtagaggaacttactttcaaca 22063926  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 208
Target Start/End: Complemental strand, 22064428 - 22064334
Alignment:
Q  109 aacacaaattcaaacaagtaaatcatcgaagaggaacttactttcaacaggttgataccaaaccaaactttcaacataatccttagcactataccaccaa 208  Q
    |||||||||||||||||||||||| ||| | || |||||||||||||||     |||| ||||||| |||||| ||||||||| | || | |||||||||    
T  22064428 aacacaaattcaaacaagtaaatcgtcgtaaagaaacttactttcaaca-----atacgaaaccaacctttcatcataatcctgaccattgtaccaccaa 22064334  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 22100828 - 22100777
Alignment:
Q  106 attaacacaaattcaaacaagtaaatcatcgaagaggaacttactttcaaca 157  Q
    |||| |||||| ||||||||||||||||| | | ||||||||||||||||||    
T  22100828 attagcacaaaatcaaacaagtaaatcattgtaaaggaacttactttcaaca 22100777  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 19350803 - 19350852
Alignment:
Q  114 aaattcaaacaagtaaatcatcgaagaggaacttactttcaacaggttga 163  Q
    |||||||||||| ||||||||  ||||| ||||||||||||| |||||||    
T  19350803 aaattcaaacaattaaatcattaaagagaaacttactttcaagaggttga 19350852  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 22081197 - 22081148
Alignment:
Q  106 attaacacaaattcaaacaagtaaatcatcgaagaggaacttactttcaa 155  Q
    |||| |||||||||||||||||||||| | | | ||||||||||||||||    
T  22081197 attagcacaaattcaaacaagtaaatcgttgtaaaggaacttactttcaa 22081148  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 18322696 - 18322664
Alignment:
Q  123 caagtaaatcatcgaagaggaacttactttcaa 155  Q
    |||||| ||||||||||||||||||||||||||    
T  18322696 caagtatatcatcgaagaggaacttactttcaa 18322664  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 18964540 - 18964598
Alignment:
Q  99 catatgaattaacacaaattcaaacaagtaaatcatcgaagaggaacttactttcaaca 157  Q
    |||||||||||||||||  | |||||||||| ||||| |||||||||||||||||||||    
T  18964540 catatgaattaacacaagcttaaacaagtaagtcatcaaagaggaacttactttcaaca 18964598  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 5436561 - 5436638
Alignment:
Q  108 taacacaaattcaaacaagtaaatcatcgaagaggaacttactttcaacaggttgataccaaaccaaactttcaacataatcc 190  Q
    |||||||||||||||||||||| |  | ||||||||||||||||| |||     ||||||||||||| |||||||||||||||    
T  5436561 taacacaaattcaaacaagtaacttgttgaagaggaacttacttttaac-----gataccaaaccaagctttcaacataatcc 5436638  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 20712266 - 20712319
Alignment:
Q  114 aaattcaaacaagtaaatcatcgaagaggaacttactttcaacaggttgataccaa 169  Q
    |||||||||||||||||||||  ||||||||||||||||||||| ||||| |||||    
T  20712266 aaattcaaacaagtaaatcat--aagaggaacttactttcaacaagttgaaaccaa 20712319  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 18913265 - 18913313
Alignment:
Q  121 aacaagtaaatcatcgaagaggaacttactttcaacaggttgataccaa 169  Q
    ||||| |||||||| |||||| ||||||||||||| |||||||||||||    
T  18913265 aacaattaaatcattgaagagaaacttactttcaagaggttgataccaa 18913313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 14515217 - 14515176
Alignment:
Q  116 attcaaacaagtaaatcatcgaagaggaacttactttcaaca 157  Q
    ||||||||||||||||||| ||| ||||||||||||| ||||    
T  14515217 attcaaacaagtaaatcattgaacaggaacttacttttaaca 14515176  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 18908517 - 18908580
Alignment:
Q  121 aacaagtaaatcatcgaagaggaacttactttcaacaggttgataccaaaccaaactttcaacataatc 189  Q
    ||||| ||||||||||||||  ||||||||||||| |||||||     |||||| ||||||||||||||    
T  18908517 aacaattaaatcatcgaagaaaaacttactttcaagaggttga-----aaccaagctttcaacataatc 18908580  T

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Target: scaffold0097 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 16105 - 16158
Alignment:
Q  114 aaattcaaacaagtaaatcatcgaagaggaacttactttcaacaggttgataccaa 169  Q
    |||||||||||||||||||||  ||||||||||||||||||||| ||||| |||||    
T  16105 aaattcaaacaagtaaatcat--aagaggaacttactttcaacaagttgaaaccaa 16158  T

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Target: scaffold0867 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 4404 - 4455
Alignment:
Q  106 attaacacaaattcaaacaagtaaatcatcgaagaggaacttactttcaaca 157  Q
    |||| |||||| ||||||||||||||||| | | ||||||||||||||||||    
T  4404 attagcacaaaatcaaacaagtaaatcattgtaaaggaacttactttcaaca 4455  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 32578567 - 32578615
Alignment:
Q  115 aattcaaacaagtaaatcatcgaagaggaacttactttcaacaggttga 163  Q
    ||||||||||| |||||||| |||||| |||||||| |||| |||||||    
T  32578567 aattcaaacaattaaatcattgaagagaaacttactctcaaaaggttga 32578615  T

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