View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17761_low_86 (Length: 206)

Name: NF17761_low_86
Description: NF17761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17761_low_86
NF17761_low_86
[»] chr8 (11 HSPs)
chr8 (8-181)||(34702927-34703099)
chr8 (13-97)||(5423183-5423267)
chr8 (126-165)||(4480422-4480461)
chr8 (129-170)||(7042873-7042914)
chr8 (127-164)||(29638418-29638455)
chr8 (126-155)||(40077712-40077741)
chr8 (130-170)||(139142-139182)
chr8 (130-166)||(3384656-3384692)
chr8 (126-165)||(8418257-8418297)
chr8 (60-116)||(15559130-15559186)
chr8 (129-165)||(37459460-37459496)
[»] chr5 (4 HSPs)
chr5 (13-97)||(43573010-43573094)
chr5 (126-165)||(11099430-11099469)
chr5 (133-167)||(7613830-7613864)
chr5 (129-165)||(4576363-4576399)
[»] chr2 (8 HSPs)
chr2 (126-165)||(9724994-9725033)
chr2 (32-93)||(12524316-12524377)
chr2 (126-166)||(32556286-32556326)
chr2 (126-164)||(9472538-9472576)
chr2 (126-164)||(18460604-18460642)
chr2 (126-166)||(883104-883144)
chr2 (134-166)||(16864885-16864917)
chr2 (21-113)||(41436091-41436183)
[»] chr1 (6 HSPs)
chr1 (126-164)||(27209921-27209959)
chr1 (21-97)||(27831858-27831934)
chr1 (126-164)||(36326159-36326197)
chr1 (130-166)||(28908209-28908245)
chr1 (126-166)||(34332226-34332266)
chr1 (126-166)||(45049105-45049145)
[»] chr7 (5 HSPs)
chr7 (126-165)||(1643270-1643309)
chr7 (126-164)||(2849371-2849409)
chr7 (130-170)||(26296151-26296191)
chr7 (130-166)||(27234622-27234658)
chr7 (130-170)||(37490565-37490605)
[»] chr3 (6 HSPs)
chr3 (126-165)||(32172787-32172826)
chr3 (75-116)||(29526055-29526096)
chr3 (130-170)||(11251074-11251114)
chr3 (126-166)||(39851764-39851804)
chr3 (126-158)||(48409702-48409734)
chr3 (130-166)||(48744380-48744416)
[»] chr4 (2 HSPs)
chr4 (128-158)||(34790910-34790940)
chr4 (133-165)||(45290159-45290191)
[»] scaffold0034 (1 HSPs)
scaffold0034 (130-166)||(98945-98981)


Alignment Details
Target: chr8 (Bit Score: 125; Significance: 1e-64; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 34702927 - 34703099
Alignment:
Q  8 attatactataactaatacaaatttcatcattctcaatgcaatatcttcctgtttgcatttgtgatcatagtgaatacaccaatacttgataaaaacatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34702927 attatactataactaatacaaatttcatcattctcaatgcaatatcttcctgtttgcatttgtgatcatagtgaatacaccaatacttgat-aaaacatt 34703025  T
Q  108 taaaatcatannnnnnngctctttcatttatacacttttcttaatatgtgttaaatgaataaacaacttacata 181  Q
    ||||| ||||       ||||||||| ||||| |||||||||||||| |||||||||||||||| |||||||||    
T  34703026 taaaaccatatttttttgctctttcacttatatacttttcttaatatatgttaaatgaataaacgacttacata 34703099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 5423267 - 5423183
Alignment:
Q  13 actataactaatacaaatttcatcattctcaatgcaatatcttcctgtttgcatttgtgatcatagtgaatacaccaatacttga 97  Q
    ||||||| |||||| | ||| |||||||||||| |||||||||||  |||| |||| |||| || || ||||||||||| |||||    
T  5423267 actataattaatactacttttatcattctcaattcaatatcttccactttgtatttatgataatggtaaatacaccaatgcttga 5423183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 4480461 - 4480422
Alignment:
Q  126 ctctttcatttatacacttttcttaatatgtgttaaatga 165  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  4480461 ctctttcatttatacatttttcttaatatatgttaaatga 4480422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 7042873 - 7042914
Alignment:
Q  129 tttcatttatacacttttcttaatatgtgttaaatgaataaa 170  Q
    ||||||||||||| ||||||| |||||||| |||||||||||    
T  7042873 tttcatttatacatttttcttgatatgtgtgaaatgaataaa 7042914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 29638418 - 29638455
Alignment:
Q  127 tctttcatttatacacttttcttaatatgtgttaaatg 164  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  29638418 tctttcatttatacacttttcttaatctgtgtgaaatg 29638455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 40077741 - 40077712
Alignment:
Q  126 ctctttcatttatacacttttcttaatatg 155  Q
    ||||||||||||||||||||||||||||||    
T  40077741 ctctttcatttatacacttttcttaatatg 40077712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 139142 - 139182
Alignment:
Q  130 ttcatttatacacttttcttaatatgtgttaaatgaataaa 170  Q
    |||||||||||| |||||||||||||||| |||||| ||||    
T  139142 ttcatttatacatttttcttaatatgtgtgaaatgagtaaa 139182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 3384656 - 3384692
Alignment:
Q  130 ttcatttatacacttttcttaatatgtgttaaatgaa 166  Q
    |||||||||||| |||||||||||||||| |||||||    
T  3384656 ttcatttatacatttttcttaatatgtgtaaaatgaa 3384692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 8418297 - 8418257
Alignment:
Q  126 ctctttcatttatacactttt-cttaatatgtgttaaatga 165  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  8418297 ctctttcatttatgcactttttcttaatatgtgttaaatga 8418257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 15559186 - 15559130
Alignment:
Q  60 tttgcatttgtgatcatagtgaatacaccaatacttgataaaaacatttaaaatcat 116  Q
    ||||||||| |||| || || ||||||||||||||||| || |||| ||||||||||    
T  15559186 tttgcatttatgataatggtaaatacaccaatacttgacaagaacacttaaaatcat 15559130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 37459460 - 37459496
Alignment:
Q  129 tttcatttatacacttttcttaatatgtgttaaatga 165  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  37459460 tttcatttatacacttttcttaataagtgtgaaatga 37459496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 43573010 - 43573094
Alignment:
Q  13 actataactaatacaaatttcatcattctcaatgcaatatcttcctgtttgcatttgtgatcatagtgaatacaccaatacttga 97  Q
    ||||||| |||||| |||||||||| || |||| |||||||| ||  ||||||||| ||||||| |||||| |||||||||||||    
T  43573010 actataattaatactaatttcatcactcccaattcaatatctcccactttgcatttatgatcatggtgaatgcaccaatacttga 43573094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 11099469 - 11099430
Alignment:
Q  126 ctctttcatttatacacttttcttaatatgtgttaaatga 165  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  11099469 ctctttcatttatacatttttcttaatatgtgtgaaatga 11099430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 167
Target Start/End: Original strand, 7613830 - 7613864
Alignment:
Q  133 atttatacacttttcttaatatgtgttaaatgaat 167  Q
    ||||||||| |||||||||||||||||||||||||    
T  7613830 atttatacatttttcttaatatgtgttaaatgaat 7613864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 4576399 - 4576363
Alignment:
Q  129 tttcatttatacacttttcttaatatgtgttaaatga 165  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  4576399 tttcatttatacatttttcttaatatgtgtgaaatga 4576363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 9724994 - 9725033
Alignment:
Q  126 ctctttcatttatacacttttcttaatatgtgttaaatga 165  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  9724994 ctctttcatttatacacttttcttaatatgtgtgaaatga 9725033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 12524316 - 12524377
Alignment:
Q  32 tcatcattctcaatgcaatatcttcctgtttgcatttgtgatcatagtgaatacaccaatac 93  Q
    ||||||||| |||| |||||||||||  ||||||||| |||||||||| ||| |||||||||    
T  12524316 tcatcattcccaattcaatatcttccactttgcatttatgatcatagtaaatgcaccaatac 12524377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 32556286 - 32556326
Alignment:
Q  126 ctctttcatttatacacttttcttaatatgtgttaaatgaa 166  Q
    |||||||| |||||||||||||||||||||||| |||||||    
T  32556286 ctctttcacttatacacttttcttaatatgtgtgaaatgaa 32556326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 9472538 - 9472576
Alignment:
Q  126 ctctttcatttatacacttttcttaatatgtgttaaatg 164  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  9472538 ctctttcatttatacatttttcttaatatgtgtgaaatg 9472576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 18460604 - 18460642
Alignment:
Q  126 ctctttcatttatacacttttcttaatatgtgttaaatg 164  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  18460604 ctctttcatttatacacttttcttaatctgtgtgaaatg 18460642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 883144 - 883104
Alignment:
Q  126 ctctttcatttatacacttttcttaatatgtgttaaatgaa 166  Q
    |||||||| ||||||||||||||||| |||||| |||||||    
T  883144 ctctttcacttatacacttttcttaaaatgtgtgaaatgaa 883104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 16864917 - 16864885
Alignment:
Q  134 tttatacacttttcttaatatgtgttaaatgaa 166  Q
    |||||||| ||||||||||||||||||||||||    
T  16864917 tttatacatttttcttaatatgtgttaaatgaa 16864885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 41436091 - 41436183
Alignment:
Q  21 taatacaaatttcatcattctcaatgcaatatcttcctgtttgcatttgtgatcatagtgaatacaccaatacttgataaaaacatttaaaat 113  Q
    |||||| | |||||||||||||||| |||||| ||||  ||||||||| ||||  |   ||||||| |||||||| | ||||||| |||||||    
T  41436091 taatactactttcatcattctcaattcaatatattccactttgcatttatgatagtgaagaatacatcaatacttaacaaaaacacttaaaat 41436183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 27209959 - 27209921
Alignment:
Q  126 ctctttcatttatacacttttcttaatatgtgttaaatg 164  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  27209959 ctctttcatttatacacttttcttaatatgtgtaaaatg 27209921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 27831858 - 27831934
Alignment:
Q  21 taatacaaatttcatcattctcaatgcaatatcttcctgtttgcatttgtgatcatagtgaatacaccaatacttga 97  Q
    |||||| | |||||||| || |||| |||||||||||  ||||||||| |||| || |||||| |||||||||||||    
T  27831858 taatactactttcatcactcccaattcaatatcttccactttgcatttatgataatggtgaatgcaccaatacttga 27831934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 36326197 - 36326159
Alignment:
Q  126 ctctttcatttatacacttttcttaatatgtgttaaatg 164  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  36326197 ctctttcatttatacacttttcttaatctgtgtgaaatg 36326159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 28908209 - 28908245
Alignment:
Q  130 ttcatttatacacttttcttaatatgtgttaaatgaa 166  Q
    |||||||||||| |||||||||||||||| |||||||    
T  28908209 ttcatttatacatttttcttaatatgtgtgaaatgaa 28908245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 34332226 - 34332266
Alignment:
Q  126 ctctttcatttatacacttttcttaatatgtgttaaatgaa 166  Q
    |||||||| ||||||| |||||||||||||||| |||||||    
T  34332226 ctctttcacttatacatttttcttaatatgtgtgaaatgaa 34332266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 45049105 - 45049145
Alignment:
Q  126 ctctttcatttatacacttttcttaatatgtgttaaatgaa 166  Q
    ||||||| ||||||||||||||||||| ||||| |||||||    
T  45049105 ctctttcctttatacacttttcttaatttgtgtgaaatgaa 45049145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 1643309 - 1643270
Alignment:
Q  126 ctctttcatttatacacttttcttaatatgtgttaaatga 165  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  1643309 ctctttcatttatacatttttcttaatatgtgtgaaatga 1643270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 2849371 - 2849409
Alignment:
Q  126 ctctttcatttatacacttttcttaatatgtgttaaatg 164  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  2849371 ctctttcatttatacatttttcttaatatgtgtgaaatg 2849409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 26296191 - 26296151
Alignment:
Q  130 ttcatttatacacttttcttaatatgtgttaaatgaataaa 170  Q
    |||||||||||| |||||||||||||||| |||||| ||||    
T  26296191 ttcatttatacatttttcttaatatgtgtcaaatgagtaaa 26296151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 27234622 - 27234658
Alignment:
Q  130 ttcatttatacacttttcttaatatgtgttaaatgaa 166  Q
    |||||||||||| |||||||||||||||| |||||||    
T  27234622 ttcatttatacatttttcttaatatgtgtgaaatgaa 27234658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 37490605 - 37490565
Alignment:
Q  130 ttcatttatacacttttcttaatatgtgttaaatgaataaa 170  Q
    |||||||||||| ||||||||| |||||| |||||||||||    
T  37490605 ttcatttatacatttttcttaacatgtgtgaaatgaataaa 37490565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 32172826 - 32172787
Alignment:
Q  126 ctctttcatttatacacttttcttaatatgtgttaaatga 165  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  32172826 ctctttcatttattcacttttcttaatatgtgtgaaatga 32172787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 29526055 - 29526096
Alignment:
Q  75 atagtgaatacaccaatacttgataaaaacatttaaaatcat 116  Q
    |||||||||  ||||||||||||||| |||||||||||||||    
T  29526055 atagtgaatcgaccaatacttgataagaacatttaaaatcat 29526096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 11251114 - 11251074
Alignment:
Q  130 ttcatttatacacttttcttaatatgtgttaaatgaataaa 170  Q
    |||||||||||| |||||||||||| ||| |||||||||||    
T  11251114 ttcatttatacatttttcttaatatatgtgaaatgaataaa 11251074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 39851804 - 39851764
Alignment:
Q  126 ctctttcatttatacacttttcttaatatgtgttaaatgaa 166  Q
    |||||||||||||||| ||| |||||||||||| |||||||    
T  39851804 ctctttcatttatacattttgcttaatatgtgtgaaatgaa 39851764  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 48409702 - 48409734
Alignment:
Q  126 ctctttcatttatacacttttcttaatatgtgt 158  Q
    |||||||||||||||| ||||||||||||||||    
T  48409702 ctctttcatttatacatttttcttaatatgtgt 48409734  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 48744380 - 48744416
Alignment:
Q  130 ttcatttatacacttttcttaatatgtgttaaatgaa 166  Q
    |||||||||||||||||||||||| |||| |||||||    
T  48744380 ttcatttatacacttttcttaatacgtgtgaaatgaa 48744416  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 158
Target Start/End: Complemental strand, 34790940 - 34790910
Alignment:
Q  128 ctttcatttatacacttttcttaatatgtgt 158  Q
    |||||||||||||||||||||||||||||||    
T  34790940 ctttcatttatacacttttcttaatatgtgt 34790910  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 45290159 - 45290191
Alignment:
Q  133 atttatacacttttcttaatatgtgttaaatga 165  Q
    ||||||||| |||||||||||||||||||||||    
T  45290159 atttatacatttttcttaatatgtgttaaatga 45290191  T

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Target: scaffold0034 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 98945 - 98981
Alignment:
Q  130 ttcatttatacacttttcttaatatgtgttaaatgaa 166  Q
    |||||||||||| |||||||||||||||| |||||||    
T  98945 ttcatttatacatttttcttaatatgtgtgaaatgaa 98981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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