View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17762_high_2 (Length: 423)
Name: NF17762_high_2
Description: NF17762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17762_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 359
Target Start/End: Original strand, 9368420 - 9368773
Alignment:
| Q |
7 |
aattattcttcgtttttaaagaaactaaactaatctacctaaattgacatcggaaaaagtaaaacatgaaattttgagaaggagcaacttctaagtctta |
106 |
Q |
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| T |
9368420 |
aattattcttcgtttttaaaaaaactaaactaatctacctaaattgacatcggagaaagtaaaacatgaaatcttgagaaggagcaactcctaactctta |
9368519 |
T |
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| Q |
107 |
agccaatacggtgagatcaaccgtgcaaaccgatgtgaaatcttgtttttaaccaatgtgaaatcccctttctgtaa---tagtggacnnnnnnnnngaa |
203 |
Q |
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| T |
9368520 |
agtcaatacggtgagaccaaccgtgcaaaccgatgtgaaatcttgtttttaaccaatgtgaaatcctctttctgtaatactagtggac-aaaaaaatgaa |
9368618 |
T |
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| Q |
204 |
tattcttacgatgtgctcctttctttctagtttccacgattacctctttatgaggaaatctttgagaaacnnnnnnngaagagacacactctaaccattc |
303 |
Q |
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| T |
9368619 |
acttcttacgatgtgctcctttctttttagtttccacgattacctctttatgaggaaatcattgagaaac-aaaaaagaagagacagactctaaccattc |
9368717 |
T |
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| Q |
304 |
attattgtttgttttattttattggcaaaattatgattgtgatcttgtaagttaat |
359 |
Q |
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| T |
9368718 |
attattgtttgttttattttattggcaaaattatgattgtgatcttgtaagttaat |
9368773 |
T |
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