View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17762_high_3 (Length: 373)
Name: NF17762_high_3
Description: NF17762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17762_high_3 |
 | |
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| [»] scaffold0794 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 11445139 - 11445494
Alignment:
| Q |
1 |
tcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagactccaaaccttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11445139 |
tcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagactccaaaccttcaa |
11445238 |
T |
|
| Q |
101 |
acacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctttgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11445239 |
acacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctttgtt |
11445338 |
T |
|
| Q |
201 |
aagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttagaggagtgccacatgttcagacga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
11445339 |
aagatagtcccaaaatgtctctcctcttgcgctctcaaataggctgagttccttgtcctcagtgagccatttcttagaggagtgccacacgttcagacga |
11445438 |
T |
|
| Q |
301 |
catggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttat |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11445439 |
catggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttat |
11445494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 11547951 - 11547596
Alignment:
| Q |
1 |
tcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagactccaaaccttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11547951 |
tcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagactccaaaccttcaa |
11547852 |
T |
|
| Q |
101 |
acacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctttgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11547851 |
acacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctttgtt |
11547752 |
T |
|
| Q |
201 |
aagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttagaggagtgccacatgttcagacga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
11547751 |
aagatagtcccaaaatgtctctcctcttgcgctctcaaataggctgagttccttgtcctcagtgagccatttcttagaggagtgccacacgttcagacga |
11547652 |
T |
|
| Q |
301 |
catggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttat |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11547651 |
catggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttat |
11547596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 11507720 - 11507365
Alignment:
| Q |
1 |
tcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagactccaaaccttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
11507720 |
tcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagacttcaaaccttcaa |
11507621 |
T |
|
| Q |
101 |
acacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctttgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11507620 |
acacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctttgtt |
11507521 |
T |
|
| Q |
201 |
aagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttagaggagtgccacatgttcagacga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| ||||||||| ||| |||||||||||| |
|
|
| T |
11507520 |
aagatagtcccaaaatgtctctcctcttgcgctctcaaagagactgagttccttctcctcagtgagccatttcgtagaggagtaccatatgttcagacga |
11507421 |
T |
|
| Q |
301 |
catggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttat |
356 |
Q |
| |
|
|||||||||| | |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11507420 |
catggatgaaccgttccggtaacaaatggtgacaaacatgttgatttgccacttat |
11507365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 346
Target Start/End: Original strand, 11468135 - 11468474
Alignment:
| Q |
7 |
actgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagactccaaaccttcaaacacat |
106 |
Q |
| |
|
||||||||||||| || ||||| ||||||| |||||||||| | | |||| | |||||| | |||||||| | ||| |||||||| |||||||||| |
|
|
| T |
11468135 |
actgtgcatttgatgtgtggaaattcttcatgaatgagttttgacacaactccagtcccacctgccacatcaaccaaagattccaaaccctcaaacacat |
11468234 |
T |
|
| Q |
107 |
gattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctttgttaagata |
206 |
Q |
| |
|
| |||| || || |||||||| || || ||||| |||||||| ||||| ||| ||||||||| || |||| ||||||||||| ||||||||||||| | |
|
|
| T |
11468235 |
ggctgcagtccttgagagcaagcttaaacatttgtgaatcagctgccatggccccttgaaacagaccaagtttatcagattcagaatctttgttaagaaa |
11468334 |
T |
|
| Q |
207 |
gtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttagaggagtgccacatgttcagacgacatgga |
306 |
Q |
| |
|
|| |||||||||| || |||| || ||| | || ||| ||||| ||||| | || |||||||||||||||||||||||| | |||| ||||||| |
|
|
| T |
11468335 |
gttaaaaaatgtctcccccattgcactttcataaagtgcaagatccttctcctctgagaaccatttcttagaggagtgccacatatccagagaacatgga |
11468434 |
T |
|
| Q |
307 |
tgaagcactccgctaacaaatggtgacaaacatgttgatt |
346 |
Q |
| |
|
||||| | ||| |||||| ||||| ||||| ||||||| |
|
|
| T |
11468435 |
tgaagaattcccttaacaagtggtgcaaaacaagttgatt |
11468474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 346
Target Start/End: Complemental strand, 11523326 - 11522987
Alignment:
| Q |
7 |
actgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagactccaaaccttcaaacacat |
106 |
Q |
| |
|
||||||||||||| || ||||| ||||||| |||||||||| | | |||| | |||||| | |||||||| | ||| |||||||| |||||||||| |
|
|
| T |
11523326 |
actgtgcatttgatgtgtggaaattcttcatgaatgagttttgacacaactccagtcccacctgccacatcaaccaaagattccaaaccctcaaacacat |
11523227 |
T |
|
| Q |
107 |
gattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctttgttaagata |
206 |
Q |
| |
|
| |||| || || |||||||| || || ||||| |||||||| ||||| ||| ||||||||| || |||| ||||||||||| ||||||||||||| | |
|
|
| T |
11523226 |
ggctgcagtccttgagagcaagcttaaacatttgtgaatcagctgccatggccccttgaaacagaccaagtttatcagattcagaatctttgttaagaaa |
11523127 |
T |
|
| Q |
207 |
gtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttagaggagtgccacatgttcagacgacatgga |
306 |
Q |
| |
|
|| |||||||||| || |||| || ||| | || ||| ||||| ||||| | || |||||||||||||||||||||||| | |||| ||||||| |
|
|
| T |
11523126 |
gttaaaaaatgtctcccccattgcactttcataaagtgcaagatccttctcctctgagaaccatttcttagaggagtgccacatatccagagaacatgga |
11523027 |
T |
|
| Q |
307 |
tgaagcactccgctaacaaatggtgacaaacatgttgatt |
346 |
Q |
| |
|
||||| | ||| |||||| ||||| ||||| ||||||| |
|
|
| T |
11523026 |
tgaagaattcccttaacaagtggtgcaaaacaagttgatt |
11522987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 34784526 - 34784235
Alignment:
| Q |
1 |
tcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagactccaaaccttcaa |
100 |
Q |
| |
|
||||| || |||||||||| | |||||| |||||||| || || ||||||| | | || ||||||| | |||||||| | ||| |||||||| |||| |
|
|
| T |
34784526 |
tcaaaaacagtgcatttgatctgaggaaatgcttcatgaataagctttgtgacagcaccggttccacccgcgacatcaacaagagattccaaaccctcaa |
34784427 |
T |
|
| Q |
101 |
acacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctttgtt |
200 |
Q |
| |
|
|||||| ||| ||| | |||||||| || || ||| |||||||||||||||||| |||||||||| ||||| | ||||||||| ||||||||| |
|
|
| T |
34784426 |
acacattcttgttctcatgaagagcaagcttaaacattctagaatcagcagccatagcatcttgaaacaaactcaaagtaccagattcagaatctttgtt |
34784327 |
T |
|
| Q |
201 |
aagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttagaggagtgccacatgt |
292 |
Q |
| |
|
|||| | |||||| | |||||||| |||| | |||||| || | ||||||| |||||| ||| ||||||||| || || | |||||||| |
|
|
| T |
34784326 |
aagaaaatcccaatagttctctcctgttgcacactcaaaaagagtttgttccttatcctcattgaaccatttctttgaagacttccacatgt |
34784235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 34776302 - 34776100
Alignment:
| Q |
13 |
catttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagactccaaaccttcaaacacatgattgc |
112 |
Q |
| |
|
||||| |||| ||||||| |||||| ||||||||||| | ||| || | ||||||||||||||||| | |||||||||||| || || || | || |
|
|
| T |
34776302 |
catttaaggtgaggaaaaatttcatgaatgagttttgtaacaccaccagtaccacctccaacatcaacaagagactccaaaccctcgaaaacgcgtttat |
34776203 |
T |
|
| Q |
113 |
actcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctttgttaagatagtccca |
212 |
Q |
| |
|
||||| ||| |||| || || ||| |||||||| |||||||| |||||||||||||||| | |||||||| ||||||||||||| | ||||| |
|
|
| T |
34776202 |
tctcttggagaacaagcttaaacattctagaatcagatgccatagcatcttgaaacatactcaaagtactagattcagaatctttgttaagaaaatccca |
34776103 |
T |
|
| Q |
213 |
aaa |
215 |
Q |
| |
|
||| |
|
|
| T |
34776102 |
aaa |
34776100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 2377 - 2022
Alignment:
| Q |
1 |
tcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagactccaaaccttcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2377 |
tcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagaccccaaaccttcaa |
2278 |
T |
|
| Q |
101 |
acacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctttgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2277 |
acacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctttgtt |
2178 |
T |
|
| Q |
201 |
aagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttagaggagtgccacatgttcagacga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| ||||||||| ||| |||||||||||| |
|
|
| T |
2177 |
aagatagtcccaaaatgtctctcctcttgcgctctcaaagagactgagttccttctcctcagtgagccatttcgtagaggagtaccatatgttcagacga |
2078 |
T |
|
| Q |
301 |
catggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttat |
356 |
Q |
| |
|
|||||||||| | |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2077 |
catggatgaaccgttccggtaacaaatggtgacaaacatgttgatttgccacttat |
2022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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