View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17762_low_10 (Length: 242)
Name: NF17762_low_10
Description: NF17762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17762_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9368782 - 9369005
Alignment:
| Q |
1 |
tttcttggattggtccttcaatttcatttacctcgagtcggtattttttacattgtatttgcatggatagcctttaagtaattcttcaattttattgtca |
100 |
Q |
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| T |
9368782 |
tttcttggattggtccttcaattttatttacctcgagtcggtactttttacattgtatttgcgtcgataacctttaagtaattcttcaattttattgtca |
9368881 |
T |
|
| Q |
101 |
tcctttacgttaccgttgatgtcaatgtaaaccacaaatttcgttccatatataaagataaaccacaatagagatgaatgattgactgnnnnnnngttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9368882 |
tcctttacgttaccgttgatgtcaatgtaaaccacaaatttcattccatatataaagataaaccacaatagagatgaatgattgactgtttttttgttta |
9368981 |
T |
|
| Q |
201 |
gtaaatccttttgtgagttttctc |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
9368982 |
gtaaatccttttgtgagttttctc |
9369005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 9373421 - 9373596
Alignment:
| Q |
1 |
tttcttggattggtccttcaatttcatttacctcgagtcggtattttttacattgtatttgcatggatagcctttaagtaattcttcaattttattgtca |
100 |
Q |
| |
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||||||||||||||||||||| || |||| |||| |||||||||||| ||||||||||||||| |||||||| || ||||| ||||| ||| ||| ||| |
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| T |
9373421 |
tttcttggattggtccttcaaatttattttcctcaagtcggtatttt--acattgtatttgcatcgatagcctgtaggtaatgcttcagtttaattctca |
9373518 |
T |
|
| Q |
101 |
tcctttacgttaccgttgatgtcaatgtaaaccacaaatttcgttccatatataaagataaaccacaatagagatgaatgatt |
183 |
Q |
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||||||| ||||| ||||||||| ||||||||| ||||| ||| ||| ||||||||||| |||| ||||||||||||||| |
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| T |
9373519 |
tcctttatgttacagttgatgtc-atgtaaacc----atttcattcaatagataaagataaatcacactagagatgaatgatt |
9373596 |
T |
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