View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17762_low_11 (Length: 237)
Name: NF17762_low_11
Description: NF17762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17762_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 16792904 - 16792684
Alignment:
| Q |
1 |
gtgctacaaatttatcagaactagatcatataaacggaacaaatgaaggtcacaatccaaaaccatcaactagccgaggaacacaacgactctacattcg |
100 |
Q |
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| T |
16792904 |
gtgctacaaatttatcagaactagatcatataaacggaacaaatgaaggtcacaatccaaaaccatcaactagccgaggaacacaacgactctacattcg |
16792805 |
T |
|
| Q |
101 |
tctcaacaccttacactacctccttgttcaaatccaatctctcgaaaaattgctatctcaaaacacttgccttgttccttcaacaaggcatagcttcaca |
200 |
Q |
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| T |
16792804 |
tctcaacaccttacattacctccttgttcaaatccaatctctcgaaaaattgctatctcaaaaccattgcattgttccttcaacaaggcatagcttcaca |
16792705 |
T |
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| Q |
201 |
agcaatctaagaacacaaagc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
16792704 |
agcaatctaagaacacaaagc |
16792684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 32735252 - 32735304
Alignment:
| Q |
66 |
tcaactagccgaggaacacaacgactctacattcgtctcaacaccttacacta |
118 |
Q |
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| T |
32735252 |
tcaactagccgaggaacacaacgcctctacattcgtatcaacaccttgcacta |
32735304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 14876384 - 14876328
Alignment:
| Q |
69 |
actagccgaggaacacaacgactctacattcgtctcaacaccttacactacctcctt |
125 |
Q |
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| T |
14876384 |
actagccgaggaacacaacgcctctacattcgtctcaacaccttacattatctcctt |
14876328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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