View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17762_low_2 (Length: 580)
Name: NF17762_low_2
Description: NF17762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17762_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 11 - 361
Target Start/End: Complemental strand, 34122584 - 34122233
Alignment:
| Q |
11 |
catcatcatcgctaagaggctttaagaataatgaagtttgaaacc-gtggaaacttaactctagaagttatcaaaattttataatctggaacttgaacct |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34122584 |
catcatcatcgctaagaggctttaagaataatgaagtttgaaacccgtggaaacttaactctagaagttatcaaaattttataatctggaacttgaacct |
34122485 |
T |
|
| Q |
110 |
tgaaggcattgacaaaggattctgagccttggaaaacattatctagaaccaacatcaatggacgacgattctctccaattttgttgagcaaacatctcaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34122484 |
tgaaggcattgacaaaggattctgagccttggaaaacattatctagaaccaacatcaatggacgacgattctctccaattttgttgagcaaacatctcaa |
34122385 |
T |
|
| Q |
210 |
gtttttaaccgcatcatcatggtctacaaggtaaggctttttatgtccacaatgttcaaacaatgtttgcacaatgttcttcaaatctggatttttcgcc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34122384 |
gtttttaaccgcatcatcatggtctacaaggtaaggctttttatgtccacaatgttcaaacaatgtttgcacaatgttcttcaaatctggatttttcgcc |
34122285 |
T |
|
| Q |
310 |
acatgaaagaacaatatattttccccaaattttcctagtccaaacaaacaaa |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34122284 |
acatgaaagaacaatatattttccccaaattttcctagtccaaacaaacaaa |
34122233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 408 - 562
Target Start/End: Complemental strand, 34122230 - 34122076
Alignment:
| Q |
408 |
ataagctatatcatgattttcaataatatcaaatatcacgacgcgaccacaatgatttgtgcaactttgatttaaaaccttatgaatgaagttagttagc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34122230 |
ataagctatatcatgattttcaataatatcaaatatcacgacgcgaccacaatgatttctgcaactttgatttaaaaccttatgaatgaagttagttagc |
34122131 |
T |
|
| Q |
508 |
caattagttaaaaggtatttatgaagtactaacacaaatacgaagatcagacact |
562 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34122130 |
caattagttaaaaggtatttatgaagtactaacacaaatacgaagatcagacact |
34122076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 13 - 378
Target Start/End: Complemental strand, 34110820 - 34110461
Alignment:
| Q |
13 |
tcatcatcgctaagaggctttaagaataatgaagtttgaaaccgtggaaacttaactctagaagttatcaaaattttataatctggaacttgaaccttga |
112 |
Q |
| |
|
|||||||| || || ||||||||||||| |||| | |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
34110820 |
tcatcatctctgagcggctttaagaatagtgaact---aaaccgtggaaactcaactctagaagttatcaaaattttacaatctggaacttgaacctgaa |
34110724 |
T |
|
| Q |
113 |
aggcattgacaaaggattctgagccttggaaaacattatctagaaccaacatcaatggacgacgattctctccaattttgttgagcaaacatctcaagtt |
212 |
Q |
| |
|
|| | | || ||||||||||||||| || |||||||||| ||||||||||||| ||||| || | || ||||||||| | ||||||| |||||||| |
|
|
| T |
34110723 |
agtcctcaactaaggattctgagcctgggcaaacattatccagaaccaacatcattggacaac---tttccccaattttggtcagcaaacttctcaagtg |
34110627 |
T |
|
| Q |
213 |
tttaaccgcatcatcatggtctacaaggtaaggctttttatgtccacaatgttcaaacaatgtttgcacaatgttcttcaaatctggatttttcgccaca |
312 |
Q |
| |
|
|||||| |||||||| | ||||| ||| |||||| | ||||||||||||| ||| ||||| ||||||||||||||||||| |||| |||| | |||| |
|
|
| T |
34110626 |
tttaactgcatcatcgtcgtctatgaggcaaggctcgtcatgtccacaatgtcgaaataatgtctgcacaatgttcttcaaatttggaatttttgacaca |
34110527 |
T |
|
| Q |
313 |
tgaaagaacaatatattttccccaaattttcctagtccaaacaaacaaacaagattcttaaatatc |
378 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34110526 |
gtgaagaacaatatattttccccaaatttacctagtccaaacaaacaaataagattcttaaatatc |
34110461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University