View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17762_low_3 (Length: 459)
Name: NF17762_low_3
Description: NF17762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17762_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 19 - 444
Target Start/End: Original strand, 45520938 - 45521363
Alignment:
| Q |
19 |
aatttcacatcttcttcttcttcattgatcattcaattaaatggcatcatctaaacaagaaacaaaggaaataatattcaagtcgaaactaccagacata |
118 |
Q |
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| T |
45520938 |
aatttcacatcttcttcttcttcattgatcattcaattaaatggcatcatctaaacaagaaacaaaggaaataatattcaagtcgaaactaccagacata |
45521037 |
T |
|
| Q |
119 |
tacatcccaaaacatctaccgcttcattcatattgttttgaaaatctctcccaattcggttcacgtccatgtctcatcaatgcccccactggaaaggtct |
218 |
Q |
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| T |
45521038 |
tacatcccaaaccatctaccgcttcattcatattgttttgaaaatctctcccaattcggttcacgtccatgtctcatcaatgcccccaccggaaaggtct |
45521137 |
T |
|
| Q |
219 |
acacctaccacgacgtccaactcacctcccgtaaagttgcctctggtcttcacaaattgggactccaacaaggtgaagtcatcatgatcctccttcccaa |
318 |
Q |
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| T |
45521138 |
acacctaccacgacgtccaactcacctcccgtaaagttgcctctggtcttcacaaattgggactccaacaaggtgaagtcatcatgatcctccttcccaa |
45521237 |
T |
|
| Q |
319 |
ttcccctgaattcgtcttctcctttcttggtgcttcttatctcggcgctgtagccactgccgccaatcctttcttcacggctgctgagattggaaagcaa |
418 |
Q |
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| T |
45521238 |
ttcccctgaattcgtcttctcctttcttgctgcttcttatctcggcgctgtagccactgcagccaatcctttcttcacggcttctgagattggaaagcaa |
45521337 |
T |
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| Q |
419 |
gcaatatcctccaacaccaagcttat |
444 |
Q |
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| T |
45521338 |
gcaaaatcctccaacaccaagcttat |
45521363 |
T |
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Back To:
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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 410
Target Start/End: Original strand, 349765 - 350056
Alignment:
| Q |
119 |
tacatcccaaaacatctaccgcttcattcatattgttttgaaaatctctcccaattcggttcacgtccatgtctcatcaatgcccccactggaaaggtct |
218 |
Q |
| |
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||||| || ||||| || || |||||||||||||| ||||||||||| || ||| ||||||||||| || ||||||||||| || |||| | | | |
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| T |
349765 |
tacattcccaaacaccttcctcttcattcatattgctttgaaaatctatcaaaatatggttcacgtccttgcctcatcaatgctccaactgctgaaattt |
349864 |
T |
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| Q |
219 |
acacctaccacgacgtccaactcacctcccgtaaagttgcctctggtcttcacaaattgggactccaacaaggtgaagtcatcatgatcctccttcccaa |
318 |
Q |
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|||||||| | || |||||||||||| | | ||||| ||||| ||||| ||||| | || ||||||| || || ||||||||| | || || || || |
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| T |
349865 |
acacctactatgatgtccaactcaccgcgcaaaaagtcgcctccggtctcaacaaacttggcatccaacagggggatgtcatcatggttcttctccctaa |
349964 |
T |
|
| Q |
319 |
ttcccctgaattcgtcttctcctttcttggtgcttcttatctcggcgctgtagccactgccgccaatcctttcttcacggctgctgagattg |
410 |
Q |
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| T |
349965 |
ttgcccggaatttgtgttcgcctttctcggtgcttcttttcgcggcgccataatgactgccgccaatcccttcttcacttcagctgagattg |
350056 |
T |
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