View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17762_low_5 (Length: 393)

Name: NF17762_low_5
Description: NF17762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17762_low_5
NF17762_low_5
[»] chr8 (4 HSPs)
chr8 (256-387)||(25933413-25933544)
chr8 (19-196)||(25933161-25933329)
chr8 (256-387)||(26100932-26101063)
chr8 (57-209)||(26100697-26100849)
[»] chr4 (5 HSPs)
chr4 (56-196)||(29548725-29548865)
chr4 (274-366)||(29548958-29549050)
chr4 (68-183)||(29554904-29555019)
chr4 (261-360)||(29555154-29555253)
chr4 (68-142)||(29559120-29559194)
[»] chr3 (1 HSPs)
chr3 (274-369)||(87805-87900)


Alignment Details
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 256 - 387
Target Start/End: Original strand, 25933413 - 25933544
Alignment:
Q  256 caagcaggtaatcctgaaaaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttctt 355  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25933413 caagcaggtaattctgaaaaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttctt 25933512  T
Q  356 ttgactctgttgttgagggttgtgatgatgtc 387  Q
    ||||||||||||||||||||||||||| ||||    
T  25933513 ttgactctgttgttgagggttgtgatggtgtc 25933544  T

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Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 25933161 - 25933329
Alignment:
Q  19 tatagggataatttcaattacaagcaatcgtagaaggatgatgagtggagaaggaaaggtggtgtgtgtgacaggtgctaatggttttattgcttcatgg 118  Q
    ||||||||||||||||||||||||||         ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25933161 tatagggataatttcaattacaagca---------ggatgatgagtggggaaggaaaagtggtgtgtgtgacaggtgctaatggttttattgcttcatgg 25933251  T
Q  119 attgttaagtttctacttcaacgtggttacactgtcagagccactgttcgtcatccaagtcagtacttctttttcctt 196  Q
    |||||||||||||| |||||| ||||||||||||||||||| ||||||||||| |||||||||| ||||||| |||||    
T  25933252 attgttaagtttctccttcaatgtggttacactgtcagagcaactgttcgtcacccaagtcagtgcttctttctcctt 25933329  T

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Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 256 - 387
Target Start/End: Original strand, 26100932 - 26101063
Alignment:
Q  256 caagcaggtaatcctgaaaaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttctt 355  Q
    ||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26100932 caagcaggtaatcctaaaaaggttgaccacttgcttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcct 26101031  T
Q  356 ttgactctgttgttgagggttgtgatgatgtc 387  Q
    ||||||||||||||||||||||||||| ||||    
T  26101032 ttgactctgttgttgagggttgtgatggtgtc 26101063  T

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Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 57 - 209
Target Start/End: Original strand, 26100697 - 26100849
Alignment:
Q  57 tgatgagtggagaaggaaaggtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctacttcaacgtggttacactgtcag 156  Q
    |||||||||| ||||||||||||||||||||||||||||||  ||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||| |    
T  26100697 tgatgagtggggaaggaaaggtggtgtgtgtgacaggtgcttctggttttatagcttcatggattgtcaagttcctactccaacgtggttacactgtccg 26100796  T
Q  157 agccactgttcgtcatccaagtcagtacttctttttccttcaaattctttctc 209  Q
    ||||||||| ||| | ||||||  || | | |||||||||||| |||||||||    
T  26100797 agccactgtccgtgacccaagtatgtgcatgtttttccttcaacttctttctc 26100849  T

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Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 56 - 196
Target Start/End: Original strand, 29548725 - 29548865
Alignment:
Q  56 atgatgagtggagaaggaaaggtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctacttcaacgtggttacactgtca 155  Q
    |||| |||||| ||||| ||||| |||||||| |||||||||   ||||| |||||||||||| |||| |||||||| || ||||||||||| ||||| |    
T  29548725 atgaagagtggtgaaggtaaggttgtgtgtgtaacaggtgcttcaggtttcattgcttcatgggttgtcaagtttcttctccaacgtggttatactgtta 29548824  T
Q  156 gagccactgttcgtcatccaagtcagtacttctttttcctt 196  Q
    |||||||||||||| | || ||||||| ||||||| |||||    
T  29548825 gagccactgttcgtgaccctagtcagtgcttctttctcctt 29548865  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 274 - 366
Target Start/End: Original strand, 29548958 - 29549050
Alignment:
Q  274 aaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcttttgactctgtt 366  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |  | ||||||||||| ||||| ||||||    
T  29548958 aaggttgatcacttgcttaaacttgatggtgcaaaggaaaggttgcaactctttaaggcagatttacttgaagaaggttcctttgattctgtt 29549050  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 29554904 - 29555019
Alignment:
Q  68 gaaggaaaggtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctacttcaacgtggttacactgtcagagccactgttc 167  Q
    |||||||||||||| ||||| || ||||||   |||| ||||||||||||| |||| || ||||| |||||||||||||||||||| |||||||||||||    
T  29554904 gaaggaaaggtggtttgtgtaactggtgcttcaggttatattgcttcatggcttgtcaaatttctccttcaacgtggttacactgttagagccactgttc 29555003  T
Q  168 gtcatccaagtcagta 183  Q
    || |||||||| ||||    
T  29555004 gtgatccaagttagta 29555019  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 261 - 360
Target Start/End: Original strand, 29555154 - 29555253
Alignment:
Q  261 aggtaatcctgaaaaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcttttgac 360  Q
    |||||||||| | |||||||| || ||  |||||||||||||||| ||||| |||||||| ||||| ||||||||||| || ||||||||||| ||||||    
T  29555154 aggtaatcctaataaggttgaccatttacttaaacttgatggtgctaaggaaaggttgcacctcttcaaggcagatctattagaagaaggttcatttgac 29555253  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 142
Target Start/End: Original strand, 29559120 - 29559194
Alignment:
Q  68 gaaggaaaggtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctacttcaacgt 142  Q
    ||||||||||| |||||||| ||||||| |   |||| ||||||||||||| ||||||||||||| || ||||||    
T  29559120 gaaggaaaggttgtgtgtgtaacaggtggttcaggttatattgcttcatggcttgttaagtttcttctccaacgt 29559194  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 274 - 369
Target Start/End: Original strand, 87805 - 87900
Alignment:
Q  274 aaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcttttgactctgttgtt 369  Q
    |||||||| ||||||||||| ||||||||||| |||||||| |||||||| || |||||| ||||  | ||||||||| | ||||| |||||||||    
T  87805 aaggttgaccacttggttaagcttgatggtgctaaggagagattgcaactgttcaaggcaaatctacttgaagaaggtgcctttgattctgttgtt 87900  T

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