View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17762_low_7 (Length: 341)
Name: NF17762_low_7
Description: NF17762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17762_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 54791690 - 54792015
Alignment:
| Q |
1 |
gtataatgagaagaccatgtccttaagtaggatgctggaggagaaagacaggcttcacaatgcttttgttgaaggtttgtataatgtctgttagaatctg |
100 |
Q |
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| T |
54791690 |
gtataatgagaagaccatgtccttaagtaggatgctggaggagaaagacaggcttcacaatgcttttgttgaaggtttgtataatgtctgttagaatctg |
54791789 |
T |
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| Q |
101 |
attttgccttattgtatgtaaaggctgtgtgcttcatgtttggccatgtannnnnnnctattcttgtacgatcattgaagcagaagagtagnnnnnnnct |
200 |
Q |
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| T |
54791790 |
attttgccttattgtatgtaaaggctgtgtgcttcatgtttggccatgtatttttttctattcttgtatgatcattgaagcagaagagtagaaaaaaact |
54791889 |
T |
|
| Q |
201 |
tataggttttaatgctacaaaaatgtctgtctcacnnnnnnnnnnnnnnnnnnnnnnnngagtcaaggagtatgcagcgtaaagcccgtgaggaggtacg |
300 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791890 |
tataggttttaatgctacaaaaatgtctgtctcacttttttatttttattttattattagagtcaaggagtatgcagcgtaaagcccgtgaggaggtacg |
54791989 |
T |
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| Q |
301 |
aaggatcttggaagaacaagaaaagt |
326 |
Q |
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|||||||||||||||||||||||||| |
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| T |
54791990 |
aaggatcttggaagaacaagaaaagt |
54792015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 54777456 - 54777129
Alignment:
| Q |
1 |
gtataatgagaagaccatgtccttaagtaggatgctggaggagaaagacaggcttcacaatgcttttgttgaaggtttgtataatgtctgttagaatctg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54777456 |
gtataatgagaagaccatgtccttaagtaggatgctggaggagaatgacaggcttcacaatgcttttgttgaaggtttgtataatgtctgttagaatctg |
54777357 |
T |
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| Q |
101 |
attttgccttattgtatgtaaaggctgtgtgcttcatgtttggccatgtannnnnnnctattcttgtacgatcattgaagcagaagagtagnnnnnnnct |
200 |
Q |
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| T |
54777356 |
attttgccttattgtatgtaaaggctgtgtgcttcatgtttggccatgtatgtttttctattcttgtacgatcattgaggcagaagagtagaaaaaaact |
54777257 |
T |
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| Q |
201 |
t--ataggttttaatgctacaaaaatgtctgtctcacnnnnnnnnnnnnnnnnnnnnnnnngagtcaaggagtatgcagcgtaaagcccgtgaggaggta |
298 |
Q |
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| T |
54777256 |
tgcataggttttaatgctacaaaaatgtctgtctcacttttttatttttattttattattagagtcaaggagtatgcagcgtaaagcccgtgaggagtta |
54777157 |
T |
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| Q |
299 |
cgaaggatcttggaagaacaagaaaagt |
326 |
Q |
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| T |
54777156 |
cgaaggatcttggaagaacaagaaaagt |
54777129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 52284348 - 52284538
Alignment:
| Q |
1 |
gtataatgagaagaccatgtccttaagtaggatgctggaggagaaagacaggcttcacaatgcttttgttgaaggtttgtataatgtctgttagaatctg |
100 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
52284348 |
gtataacgagaagaccatgtctttaagtaggatgctggaggagaaagacaggcttcacaatgcttttgttgaaggtttgtataatttctgttagaatctg |
52284447 |
T |
|
| Q |
101 |
attttgccttattgtatgtaaaggctgtgtgcttcatgtttggccatgtannnnnnnctattcttgtacgatcattgaagcagaagagtag |
191 |
Q |
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|||||| |||||||||||||||||| |||||||||| ||||||||||||| |||||||||||| |||||||||||| ||||||| |
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| T |
52284448 |
attttgtcttattgtatgtaaaggccgtgtgcttcaagtttggccatgtatgtttttatattcttgtacgttcattgaagcagtagagtag |
52284538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 799618 - 799734
Alignment:
| Q |
1 |
gtataatgagaagaccatgtccttaagtaggatgctggaggagaaagacaggcttcacaatgcttttgttgaaggtttgtataatgtctgttagaatctg |
100 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| |||||| |
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| T |
799618 |
gtataatgagaagactatgtccttgagtaggatgctggaggagaaagacaaacttcacagtgcttttgttgaaggtttgtataatttctgttataatctg |
799717 |
T |
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| Q |
101 |
attttgccttattgtat |
117 |
Q |
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||||||||||||||||| |
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| T |
799718 |
attttgccttattgtat |
799734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 52284616 - 52284682
Alignment:
| Q |
260 |
gagtcaaggagtatgcagcgtaaagcccgtgaggaggtacgaaggatcttggaagaacaagaaaagt |
326 |
Q |
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||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
52284616 |
gagtcaaggagcatgcagcgtaaagctcgtgaagaggtacgaaggatcttggaagaacaagaaaagt |
52284682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 799797 - 799863
Alignment:
| Q |
260 |
gagtcaaggagtatgcagcgtaaagcccgtgaggaggtacgaaggatcttggaagaacaagaaaagt |
326 |
Q |
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||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||| |||| |
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| T |
799797 |
gagtcaaggagcatgcagcgtaaagctcgtgatgaggtacgaaggatattggaagaacaagagaagt |
799863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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