View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17762_low_9 (Length: 248)
Name: NF17762_low_9
Description: NF17762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17762_low_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 16793258 - 16793017
Alignment:
| Q |
7 |
agcataggtagtgaaattggcaaagacaactgtggaagagttctttcaaattccaataggaataactgaagaactagttcaagatcttgctaatggattg |
106 |
Q |
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| T |
16793258 |
agcagaggtagtgaaattggcaaagacaactgtggaagagttctttcaaattccaataggaataactgaagaactagttcaagatcttgctaatggattg |
16793159 |
T |
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| Q |
107 |
gaaagtctcttacaggactatatgatgtttgttgcagcatgtggtaagtactgtaaatacatgaaattaattaaagaataaatatagccgaatacgaaat |
206 |
Q |
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| T |
16793158 |
gaaagtctcttacaggactatatgatgtttgttgcagcatgtggtaagtactgtaaatacataaaattaattaaagaataaatatagtcgattacgaaat |
16793059 |
T |
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| Q |
207 |
agcttatgcataagcacttgcaaaaaacaggttttaactttt |
248 |
Q |
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| T |
16793058 |
agcttatgcataagcacttgcaaaaaacaggttttaactttt |
16793017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 154
Target Start/End: Original strand, 32734721 - 32734837
Alignment:
| Q |
38 |
gtggaagagttctttcaaattccaataggaataactgaagaactagttcaagatcttgctaatggattggaaagtctcttacaggactatatgatgtttg |
137 |
Q |
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| T |
32734721 |
gtggacgaattcttccaagttccaatagcaattacagaagatttagttcaagaccttgttgatggattggaaatcctcttcctagactacatgaaatttg |
32734820 |
T |
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| Q |
138 |
ttgcagcatgtggtaag |
154 |
Q |
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| T |
32734821 |
ttgcatcatgtggtaag |
32734837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 14876978 - 14876890
Alignment:
| Q |
18 |
tgaaattggcaaagacaactgtggaagagttctttcaaattccaataggaataactgaagaactagttcaagatcttgctaatggattg |
106 |
Q |
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| T |
14876978 |
tgaatttggcgaagaaaattgtgcaagagttctttcaaattccggttgcaataactgaggatttagttcaagaacttgttgatggattg |
14876890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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