View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_high_1 (Length: 960)
Name: NF17763_high_1
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 43360405 - 43360844
Alignment:
| Q |
1 |
agaagagtgaatattgtacattagtgtttctcatgtgctaatttatgatttaatggatgacctctttgacgcaaaagcatggacagagattatattagta |
100 |
Q |
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| T |
43360405 |
agaagagtgaatattgtacattagtgtttctcatgtgctaatttatgatttaatggatgacctctttgacgcaaaagcatggacagagattatattagta |
43360504 |
T |
|
| Q |
101 |
gttgatttctcaaagtaatcggtgtaaattagtattaggaggtaaattagtagtttatttctcaaggggaatgattgtgtactgcctaataactactgaa |
200 |
Q |
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| T |
43360505 |
gttgatttctcaaagtaatcggtgtaaattagtattaggaggtaaattagtagtttatttctcaaggggaatgattgtgtactgcctaataactactgaa |
43360604 |
T |
|
| Q |
201 |
attaacaagataaaatttcagaacacgagagaattacctgctgaagcacaattaaagaggttacggtgacttctgctctgtgatggtttatagtttcaaa |
300 |
Q |
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| T |
43360605 |
agtaacaagataaaatttcagaacacgagagaattacctgctgaagcacaattaaagaggttacggtgacttctgctctgtgatggtttatagtttcaaa |
43360704 |
T |
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| Q |
301 |
tttcaagaggataacatttcttttgctaacacttgagattttttatattgcatgtttgcactgtcatgtttcctcttcaaacaatttcgtgaaaaataaa |
400 |
Q |
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| T |
43360705 |
tttcaagaggataacatttcttttgctaacacttgagattttttatattgcatgtttgcactgtcatgtttcctcttcaaacaatttcgtgaaaaataaa |
43360804 |
T |
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| Q |
401 |
aactgtaaatgtcaagctcacttgaacttggccaaatatc |
440 |
Q |
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| T |
43360805 |
agctgtaaatgtcaagctcacttgaacttggccaaatatc |
43360844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 461 - 950
Target Start/End: Original strand, 43360841 - 43361306
Alignment:
| Q |
461 |
tatcttattctaactgttactgtttaacatgcaattctataaagctgctactattgtcattggaggaaaacttgcagtactctaacatgtcatgtccttt |
560 |
Q |
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| T |
43360841 |
tatcttattctaactgttactgtttaacatgcaattctataaagctgctactattgtcattggaggaaaacttgcagtactctaacatgtcatgtccttt |
43360940 |
T |
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| Q |
561 |
cgaaggtgatgttgtannnnnnnaatagtgttaattgttgtgtattgatattcaagctgtgatttacctcgaagtatttgagccatgattgtgttagtta |
660 |
Q |
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| T |
43360941 |
cgaaggtgatgttgtatttttttaatagtgttatttgttgtgtattgatattcaagctgtgatttacctcgaagtatttgagccatgattgtgttagtta |
43361040 |
T |
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| Q |
661 |
aacatagagtggaaattaccacatttgatctttgctttatgcattattgctcacttgttggcaactgaagaagtagttaacaat--gacataaacataca |
758 |
Q |
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| T |
43361041 |
aacatagagtggaaattaccacatttgatctttgctttatgtattattgctcacttgttggcaactgaagaagtagttaacaatatgacataaatataca |
43361140 |
T |
|
| Q |
759 |
tgattttgaaagctaacaatatgctgtaacttttttagaattaagttaaattaaatagttcaccaattattcatttcagtccattttcaggcctttttcc |
858 |
Q |
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| T |
43361141 |
tgattttgaaagctaacaatatgctgtaacttttttagaattaagttaaattaaatagttcaccaattattcatttc-----------aggcctttttcc |
43361229 |
T |
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| Q |
859 |
tctttgggaaaactttggctctttgcttcaaacggctaaaattttcgtcagttgttgataagtttttctgtcaagttagtaagttgatgatg |
950 |
Q |
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| T |
43361230 |
t---------------ggctctttgcttcaaacagctaaaattttcgtcagttgttgataagtttttctgtcaagttagtaagttgatgatg |
43361306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 43362688 - 43362768
Alignment:
| Q |
4 |
agagtgaatattgtacattagtgtttctcatgtgctaatttatgatttaatggatgacctctttgacgcaaaagcatggaca |
85 |
Q |
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| T |
43362688 |
agagtgaaagttgtacatttgtgtttctcatgtgctaaatt-taatttgatgcatgacctctttgacgcaaaagcatggaca |
43362768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 886 - 950
Target Start/End: Complemental strand, 49413947 - 49413883
Alignment:
| Q |
886 |
tcaaacggctaaaattttcgtcagttgttgataagtttttctgtcaagttagtaagttgatgatg |
950 |
Q |
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| T |
49413947 |
tcaaacagctaaaattttcatcagttgttgataagtttttctattaagttactaagttgatgatg |
49413883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 322 - 462
Target Start/End: Complemental strand, 49414504 - 49414351
Alignment:
| Q |
322 |
tttgctaacacttgagattttttatattgcatgtttgcactgtcatgtttcctctt------------caaacaatttcgtgaa-aaataaaaactgtaa |
408 |
Q |
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| T |
49414504 |
tttgctaacacttaagattttttacattgcacatttgcactgtcatatttcatcttgatgctgtcaagcaaagaattttgtaaataaataaaacccataa |
49414405 |
T |
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| Q |
409 |
atgtcaagctcacttgaacttggccaaatatcaattgttagcctttagcaagta |
462 |
Q |
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| T |
49414404 |
atatcaagctcacttgaacttagccaaatatcaatctttagcctttagcaagta |
49414351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 17637674 - 17637603
Alignment:
| Q |
57 |
atgacctctttgacgcaaaagcatggacagagattatattagtagttgatttctcaaagtaatcggtgtaaa |
128 |
Q |
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| T |
17637674 |
atgacctctttgacccaaaagtatggacaaagattaaatcagtagttgatttctcaaaggaacaggtgtaaa |
17637603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 595 - 678
Target Start/End: Complemental strand, 49414212 - 49414126
Alignment:
| Q |
595 |
ttgttgtgtattgatattcaagctgtgatttacctcgaagtatttgagccatgat-tgt--gttagttaaacatagagtggaaatta |
678 |
Q |
| |
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|||||||||| |||||||||||||||||||||| || ||||||||||| |||||| ||| |||||| ||||||||||||||||| |
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| T |
49414212 |
ttgttgtgtaatgatattcaagctgtgatttacttcaaagtatttgagacatgatgtgttaattagttcgacatagagtggaaatta |
49414126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 49432368 - 49432331
Alignment:
| Q |
14 |
ttgtacattagtgtttctcatgtgctaatttatgattt |
51 |
Q |
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| T |
49432368 |
ttgtacattagtgtttttcatgtgctaaattatgattt |
49432331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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