View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_high_103 (Length: 275)
Name: NF17763_high_103
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_103 |
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Alignment Details
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 122 - 263
Target Start/End: Original strand, 49187575 - 49187716
Alignment:
| Q |
122 |
tagttgaaaattagagtgcaaatgcataatcaattcaaaattttgatttgaaactacttataattagnnnnnnnnnnnnnnnnngaagtgtacttataac |
221 |
Q |
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| T |
49187575 |
tagttgaaaattagagtgcaaatgcataatcaattcaaaattttgatttgaaactatttataattagttttttgtttttgttttgaagtgtacttataat |
49187674 |
T |
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| Q |
222 |
tagcttcttgattagttgattatactcctatttggttgccta |
263 |
Q |
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| T |
49187675 |
tagcttcttgattagttgattatactcctatttggttgccta |
49187716 |
T |
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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 49187454 - 49187519
Alignment:
| Q |
1 |
ccgccttagccatttcctttgctggtgtcaccggtttcagcttcctggtaagctcaaaaattactt |
66 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49187454 |
ccgccttagccatttcctttgctggtgtcaccggtttcagcttcctggtaagctcaaaaattactt |
49187519 |
T |
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