View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_high_113 (Length: 265)
Name: NF17763_high_113
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_113 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 18513310 - 18513071
Alignment:
| Q |
1 |
accaccatctttagatgtagtgattccaagcaaagaagagctgtctatatgcttccaattctcccaattttcattcctaaccattcttttaatccaacca |
100 |
Q |
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| T |
18513310 |
accaccatctttagatgtagtgattccaagcaaagaagagctatctatatgcttccaattctcccaattttcattcctaaccattcttttaatccaacca |
18513211 |
T |
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| Q |
101 |
tctctcgtagctgtatatagagcaccatctttatccacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcacattctatcatgtta |
200 |
Q |
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| T |
18513210 |
tctcttgtagctgtatatagaacaccatttttatcaacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcacattctgttatgtta |
18513111 |
T |
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| Q |
201 |
tggaaacattaatagacaattaaatacatatgatattgaa |
240 |
Q |
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| T |
18513110 |
tggaaacattaatagataattaaatacatattattttgaa |
18513071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 18486961 - 18486722
Alignment:
| Q |
1 |
accaccatctttagatgtagtgattccaagcaaagaagagctgtctatatgcttccaattctcccaattttcattcctaaccattcttttaatccaacca |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18486961 |
accaccatctttagatgttgtgattccaagcaaagaagagctatctatatgcttccaattctcccaatttccattcctaaccattcttttaatccaacca |
18486862 |
T |
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| Q |
101 |
tctctcgtagctgtatatagagcaccatctttatccacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcacattctatcatgtta |
200 |
Q |
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| T |
18486861 |
tctcttgttgctgtatataaaataccatctttatcaacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcacattctgttatgtta |
18486762 |
T |
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| Q |
201 |
tggaaacattaatagacaattaaatacatatgatattgaa |
240 |
Q |
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| T |
18486761 |
tggaaacattaatagacaattaaatacatattattttgaa |
18486722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 18506812 - 18506620
Alignment:
| Q |
1 |
accaccatctttagatgtagtgattccaagcaaagaagagctgtctatatgcttccaattctcccaattttcattcctaaccattcttttaatccaacca |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18506812 |
accaccatctttagatgtagtgattccaagcaaagaagagctatctatatgcttccaattctcccaattttcattcctaaccattcttttaatccaacca |
18506713 |
T |
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| Q |
101 |
tctctcgtagctgtatatagagcaccatctttatccacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcacattctat |
193 |
Q |
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| T |
18506712 |
tctcttgtagctgtatatagaacaccatctttatcaacacaaacatcttctggttgtttcagaaatccttctccaagtttaatcacactctat |
18506620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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