View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_high_115 (Length: 264)
Name: NF17763_high_115
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_115 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 264
Target Start/End: Complemental strand, 17121238 - 17120987
Alignment:
| Q |
13 |
cagagagaagcaaccaaacacaataaccaatagggagagaaacattcaaacagaatagaccaatagagagaagactaatcaaacaaagaagaatcaacaa |
112 |
Q |
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| T |
17121238 |
cagagagaagcaaccaaacacaataatcaatagggagataaacattcaaacagaatagaccaatagagagaagaccaatcaaacaaagaagaatcaacaa |
17121139 |
T |
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| Q |
113 |
atataggagcaatcagcataagaatcaaaagggagagaagcaatcgatgtatgctttctatacaacatgcctagatttttatgaaaaataggattgtaga |
212 |
Q |
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| T |
17121138 |
atataggagcaatcagcataagaatcaaaagggagagaagcaatcaatgtatgctttctatacaacatgcctagatttttatgaaaaataggattgtaga |
17121039 |
T |
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| Q |
213 |
aacagtttaaacacgatgtagaaacatgggaatgcaaagggataaaaatttc |
264 |
Q |
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| T |
17121038 |
aacagtttaaacacgatgtagaaacatgggaatgcaaagggataaaaatttc |
17120987 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 157
Target Start/End: Complemental strand, 8574533 - 8574444
Alignment:
| Q |
69 |
agaccaatagagagaagactaatcaaacaaagaagaatcaacaaatataggagcaatc-agcataagaatcaaaagggagagaagcaatc |
157 |
Q |
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| T |
8574533 |
agaccaatagggagaagaccaaacaaacaaatattaatcaacatatagaggagcaatcaaacagaataatcaaaagggagagaagcaatc |
8574444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 12285020 - 12284983
Alignment:
| Q |
76 |
tagagagaagactaatcaaacaaagaagaatcaacaaa |
113 |
Q |
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| T |
12285020 |
tagagagaagagaaatcaaacaaagaagaatcaacaaa |
12284983 |
T |
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