View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17763_high_127 (Length: 252)

Name: NF17763_high_127
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17763_high_127
NF17763_high_127
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-252)||(135326-135577)
[»] chr5 (17 HSPs)
chr5 (3-155)||(20866679-20866831)
chr5 (5-78)||(27398578-27398651)
chr5 (97-153)||(27399470-27399526)
chr5 (3-81)||(43162806-43162884)
chr5 (157-233)||(19820427-19820503)
chr5 (156-252)||(22013363-22013459)
chr5 (157-251)||(37328859-37328953)
chr5 (175-252)||(16203809-16203886)
chr5 (168-252)||(6770504-6770588)
chr5 (213-252)||(6471903-6471942)
chr5 (209-252)||(41091271-41091314)
chr5 (187-252)||(27144443-27144508)
chr5 (215-252)||(28588688-28588725)
chr5 (172-248)||(13287417-13287493)
chr5 (175-251)||(21191071-21191147)
chr5 (209-241)||(26716146-26716178)
chr5 (209-241)||(26985886-26985918)
[»] chr8 (18 HSPs)
chr8 (168-252)||(24362216-24362300)
chr8 (157-252)||(11927100-11927195)
chr8 (157-252)||(11944615-11944710)
chr8 (202-252)||(3025546-3025596)
chr8 (200-252)||(13844610-13844662)
chr8 (200-252)||(31236591-31236643)
chr8 (201-252)||(4611528-4611579)
chr8 (209-252)||(14731714-14731757)
chr8 (172-251)||(22197757-22197836)
chr8 (156-251)||(24669383-24669477)
chr8 (213-252)||(34897091-34897130)
chr8 (193-252)||(39954293-39954352)
chr8 (185-251)||(8343294-8343360)
chr8 (214-252)||(14134706-14134744)
chr8 (209-251)||(40332193-40332235)
chr8 (158-235)||(24196628-24196705)
chr8 (172-252)||(7658428-7658508)
chr8 (200-252)||(27213540-27213592)
[»] chr1 (25 HSPs)
chr1 (1-76)||(30204066-30204141)
chr1 (4-76)||(51483105-51483177)
chr1 (1-76)||(51499939-51500014)
chr1 (199-252)||(34712397-34712450)
chr1 (173-252)||(398779-398858)
chr1 (209-252)||(40181873-40181916)
chr1 (3-74)||(51458536-51458607)
chr1 (187-252)||(36878441-36878506)
chr1 (187-252)||(38503300-38503365)
chr1 (176-248)||(17754280-17754352)
chr1 (200-252)||(34298429-34298481)
chr1 (168-251)||(10572604-10572687)
chr1 (193-252)||(13436444-13436503)
chr1 (209-252)||(19324564-19324607)
chr1 (209-252)||(25452162-25452205)
chr1 (202-252)||(1864894-1864944)
chr1 (185-251)||(5376515-5376581)
chr1 (214-252)||(7918225-7918263)
chr1 (200-250)||(12443476-12443526)
chr1 (162-252)||(19562635-19562724)
chr1 (213-251)||(31015049-31015087)
chr1 (158-252)||(1486723-1486823)
chr1 (186-251)||(27471581-27471646)
chr1 (154-198)||(30749789-30749833)
chr1 (154-198)||(30771240-30771284)
[»] chr7 (14 HSPs)
chr7 (157-252)||(7328705-7328800)
chr7 (157-251)||(27944991-27945085)
chr7 (185-241)||(19206028-19206084)
chr7 (187-252)||(20549771-20549836)
chr7 (199-252)||(29787383-29787436)
chr7 (172-240)||(11061102-11061170)
chr7 (213-252)||(2424620-2424659)
chr7 (209-252)||(12289116-12289159)
chr7 (168-251)||(24339603-24339686)
chr7 (200-250)||(32308113-32308163)
chr7 (172-252)||(1433419-1433499)
chr7 (172-252)||(17851396-17851476)
chr7 (199-251)||(28155562-28155614)
chr7 (209-241)||(45056926-45056958)
[»] chr6 (23 HSPs)
chr6 (152-252)||(3398564-3398663)
chr6 (172-252)||(9027143-9027223)
chr6 (185-252)||(7086773-7086840)
chr6 (185-252)||(8805586-8805653)
chr6 (157-252)||(30866158-30866253)
chr6 (209-252)||(9025508-9025551)
chr6 (172-251)||(9107385-9107464)
chr6 (152-251)||(25038086-25038185)
chr6 (157-251)||(8365534-8365628)
chr6 (159-252)||(9658832-9658924)
chr6 (175-251)||(1681726-1681802)
chr6 (159-251)||(12696277-12696368)
chr6 (200-252)||(19040345-19040397)
chr6 (200-252)||(26562682-26562734)
chr6 (213-252)||(7265607-7265646)
chr6 (209-252)||(7996392-7996435)
chr6 (209-252)||(8022366-8022409)
chr6 (172-251)||(16766662-16766741)
chr6 (154-192)||(10649275-10649313)
chr6 (174-252)||(11784230-11784308)
chr6 (175-252)||(19044432-19044509)
chr6 (215-252)||(31579239-31579276)
chr6 (158-251)||(31959111-31959203)
[»] chr2 (15 HSPs)
chr2 (157-252)||(21782832-21782927)
chr2 (185-252)||(21616740-21616807)
chr2 (157-252)||(23717977-23718071)
chr2 (157-252)||(24105649-24105743)
chr2 (158-223)||(21624217-21624282)
chr2 (165-241)||(18420459-18420535)
chr2 (157-251)||(21374714-21374809)
chr2 (154-251)||(19536412-19536510)
chr2 (157-251)||(20539689-20539783)
chr2 (162-252)||(41942060-41942150)
chr2 (155-223)||(6940203-6940271)
chr2 (172-252)||(18276486-18276566)
chr2 (200-252)||(31284041-31284093)
chr2 (200-252)||(31808070-31808122)
chr2 (200-252)||(42832290-42832342)
[»] scaffold0306 (1 HSPs)
scaffold0306 (152-251)||(13345-13444)
[»] scaffold0152 (1 HSPs)
scaffold0152 (152-251)||(21883-21982)
[»] scaffold0223 (1 HSPs)
scaffold0223 (157-251)||(20122-20216)
[»] chr4 (11 HSPs)
chr4 (185-252)||(14126125-14126192)
chr4 (200-252)||(903915-903967)
chr4 (204-252)||(8423732-8423780)
chr4 (172-252)||(24343472-24343552)
chr4 (209-252)||(15659774-15659817)
chr4 (209-252)||(56257935-56257978)
chr4 (210-252)||(18576051-18576093)
chr4 (214-252)||(36635331-36635369)
chr4 (155-251)||(752948-753044)
chr4 (215-252)||(22440614-22440651)
chr4 (200-252)||(40613443-40613495)
[»] chr3 (19 HSPs)
chr3 (158-252)||(8789564-8789652)
chr3 (202-252)||(11313814-11313864)
chr3 (166-252)||(11665903-11665989)
chr3 (157-252)||(34307794-34307895)
chr3 (23-76)||(36549947-36550001)
chr3 (157-251)||(55401025-55401119)
chr3 (169-241)||(5441056-5441129)
chr3 (156-252)||(8383206-8383302)
chr3 (212-252)||(11251983-11252023)
chr3 (156-247)||(4466619-4466710)
chr3 (172-251)||(4990982-4991061)
chr3 (209-252)||(9624643-9624686)
chr3 (209-252)||(27277852-27277895)
chr3 (172-251)||(41961665-41961744)
chr3 (202-252)||(7928445-7928495)
chr3 (155-252)||(25064857-25064954)
chr3 (172-248)||(16000034-16000110)
chr3 (200-252)||(16192764-16192816)
chr3 (172-252)||(24205055-24205135)
[»] scaffold1528 (1 HSPs)
scaffold1528 (176-248)||(1004-1076)
[»] scaffold0652 (1 HSPs)
scaffold0652 (172-251)||(477-556)
[»] scaffold0279 (1 HSPs)
scaffold0279 (157-232)||(17904-17979)
[»] scaffold0171 (1 HSPs)
scaffold0171 (153-252)||(23367-23465)
[»] scaffold0008 (1 HSPs)
scaffold0008 (209-252)||(263386-263429)
[»] scaffold0793 (1 HSPs)
scaffold0793 (155-251)||(4898-4994)
[»] scaffold0018 (1 HSPs)
scaffold0018 (158-251)||(192264-192356)
[»] scaffold0103 (1 HSPs)
scaffold0103 (187-251)||(51791-51855)
[»] scaffold0044 (1 HSPs)
scaffold0044 (216-252)||(53189-53225)
[»] scaffold0003 (1 HSPs)
scaffold0003 (172-252)||(241559-241639)


Alignment Details
Target: scaffold0020 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 135577 - 135326
Alignment:
Q  1 ctaaattgaaggaatatatgatgaagcatttcagagagttcaggcatatctattgctctcctttaaagcaggtaaagtcagatatgcggataagagatct 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  135577 ctaaattgaaggaatatctgatgaagcatttcagagagttcaggcatatctattgctctcctttaaagcaggtaaagtcagatatgcggataagagatct 135478  T
Q  101 caattatctgtttacattttccttcattttctcttgttttctcagctattgataatctatgaagcatggatacggacaccgaatacgacacagacaccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  135477 caattatctgtttacattttccttcattttctcttgttttctcagctattgataacctatgaagcatggatacggacaccgaatacgacacagacaccaa 135378  T
Q  201 cacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  135377 cacaccgacactgctaataatttgagaaaatcacataattctgtgtaattat 135326  T

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Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 20866831 - 20866679
Alignment:
Q  3 aaattgaaggaatatatgatgaagcatttcagagagttcaggcatatctattgctctcctttaaagcaggtaaagtcagatatgcggataagagatctca 102  Q
    ||||||||||||||| ||| ||||||||   |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  20866831 aaattgaaggaatatctgaagaagcattctggagagttcaggcatatctattgttctcctttaaagcaggtaaagtcagatatgcgaataagagatctca 20866732  T
Q  103 attatctgtttacattttccttcattttctcttgttttctcagctattgataa 155  Q
    |||||||| |||||||||||||| |||||||||||||||||||||| ||||||    
T  20866731 attatctgcttacattttccttcgttttctcttgttttctcagctagtgataa 20866679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 27398578 - 27398651
Alignment:
Q  5 attgaaggaatatatgatgaagcatttcagagagttcaggcatatctattgctctcctttaaagcaggtaaagt 78  Q
    |||| |||||||| ||| ||||||||||||||||||||||||| || |||||||||||||| || |||||||||    
T  27398578 attgcaggaatatctgaagaagcatttcagagagttcaggcatgtccattgctctcctttagaggaggtaaagt 27398651  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 27399470 - 27399526
Alignment:
Q  97 atctcaattatctgtttacattttccttcattttctcttgttttctcagctattgat 153  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||    
T  27399470 atctcaattatatgtttacattttccttcattatctcttgttttctcagctaatgat 27399526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 43162806 - 43162884
Alignment:
Q  3 aaattgaaggaatatatgatgaagcatttcagagagttcaggcatatctattgctctcctttaaagcaggtaaagtcag 81  Q
    ||||||||||||||||| |  |||||||||||||||||||| ||| || |||||  |||||||||||||||||| ||||    
T  43162806 aaattgaaggaatatataaaaaagcatttcagagagttcagacatgtcaattgcagtcctttaaagcaggtaaaatcag 43162884  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 19820503 - 19820427
Alignment:
Q  157 ctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatca 233  Q
    |||||||||| |||||||||||||| | ||||||| |||||  |||| ||| ||| ||||||||||||||| |||||    
T  19820503 ctatgaagcacggatacggacaccggacacgacacggacactgacactccgacaccgctaataatttgagaaaatca 19820427  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 22013363 - 22013459
Alignment:
Q  156 tctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||| |||||||||||||| | ||||||| |||||  |||| ||| ||| ||||||||||||  | ||| ||||||||  ||||||||||    
T  22013363 tctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacacagctaataatttggaaaaattacataatttagtgtaattat 22013459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 37328953 - 37328859
Alignment:
Q  157 ctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    |||||||||| ||| |||||||||||| ||||||| |||||  | |||||| ||| || |||||||||  | ||||||| ||||| |||||||||    
T  37328953 ctatgaagcacggacacggacaccgaacacgacacggacactgatacaccgacacagcaaataatttgtaaaaatcacaaaattcagtgtaatta 37328859  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 16203886 - 16203809
Alignment:
Q  175 gacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||| | ||||| ||||| ||||  ||| ||||||||||||||||||| |||| |||||||  ||||||||||    
T  16203886 gacaccgaacatgacacggacactaacatgccgacactgctaataatttgagaaaatctcataatttagtgtaattat 16203809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 6770504 - 6770588
Alignment:
Q  168 ggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||||||||||| | ||||| |||||  |||||| | |||  |||||||||| ||| ||||||||||||| ||||| ||||    
T  6770504 ggatacggacaccgaacatgacacggacactgacacactgacacaactaataatttaagaaaatcacataattcagtgtacttat 6770588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 6471942 - 6471903
Alignment:
Q  213 gctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  6471942 gctaataatttgagaaaatcacataattcagtgtaattat 6471903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 41091314 - 41091271
Alignment:
Q  209 cactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||||| |||||||| ||||||||||||| ||||||||||    
T  41091314 cactgctaatgatttgagaaaatcacataattcagtgtaattat 41091271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 27144443 - 27144508
Alignment:
Q  187 gacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||||||  |||| ||| ||| ||||||||||||||  ||||||||||||  ||||||||||    
T  27144443 gacacagacactgacacgccgacaccgctaataatttgaggaaatcacataatttagtgtaattat 27144508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 28588725 - 28588688
Alignment:
Q  215 taataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  28588725 taataatttgagaaaatcacataattcagtgtaattat 28588688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 13287493 - 13287417
Alignment:
Q  172 acggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaa 248  Q
    |||||||||| | ||||||| ||||| |||||  || ||| | ||||||||||| | ||||||||||||| ||||||    
T  13287493 acggacaccggacacgacacggacactaacacgtcgacacagataataatttgaaaaaatcacataattcagtgtaa 13287417  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 21191147 - 21191071
Alignment:
Q  175 gacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    ||||||| | ||||||| |||||  |||  ||| ||| ||||||||||||| | ||||||||||||| |||||||||    
T  21191147 gacaccggacacgacacggacactgacatgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 21191071  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 26716146 - 26716178
Alignment:
Q  209 cactgctaataatttgagataatcacataattc 241  Q
    ||||||||||||||||||| |||||||||||||    
T  26716146 cactgctaataatttgagaaaatcacataattc 26716178  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 26985886 - 26985918
Alignment:
Q  209 cactgctaataatttgagataatcacataattc 241  Q
    ||||||||||||||||||| |||||||||||||    
T  26985886 cactgctaataatttgagaaaatcacataattc 26985918  T

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Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 168 - 252
Target Start/End: Complemental strand, 24362300 - 24362216
Alignment:
Q  168 ggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||||||||| |||||||||||||||| |||| ||| ||| ||||||||||||||| ||||||||||||| ||||||||||    
T  24362300 ggatacggacaccggatacgacacagacaccgacacgccgacaccgctaataatttgagagaatcacataattcagtgtaattat 24362216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 252
Target Start/End: Complemental strand, 11927195 - 11927100
Alignment:
Q  157 ctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||  |||||||||||| || ||||||| ||  | || || ||| ||||| ||||||||||| | ||||||||||||| ||||||||||    
T  11927195 ctatgaagcacagatacggacaccaaacacgacacggatgctaatacgccgacactgttaataatttgataaaatcacataattcagtgtaattat 11927100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 252
Target Start/End: Original strand, 11944615 - 11944710
Alignment:
Q  157 ctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||  |||||||||||| || ||||||| ||  | ||||| ||| ||||| ||||||||||| | |||||||||| || ||||||||||    
T  11944615 ctatgaagcacagatacggacaccaaacacgacacggatgctaacacgccgacactgttaataatttgataaaatcacataactcagtgtaattat 11944710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 3025546 - 3025596
Alignment:
Q  202 acaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||| || |||||||||||||||| ||||||||||||| ||||||||||    
T  3025546 acaccggcattgctaataatttgagaaaatcacataattcagtgtaattat 3025596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 13844662 - 13844610
Alignment:
Q  200 acacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||| ||| ||||||||||||||||||| ||||||||||||  ||||||||||    
T  13844662 acacgccgacactgctaataatttgagaaaatcacataattgagtgtaattat 13844610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 31236643 - 31236591
Alignment:
Q  200 acacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||| ||| ||||||||||||||||||| |||||||||||||  |||||||||    
T  31236643 acacgccgacactgctaataatttgagaaaatcacataattcaatgtaattat 31236591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 4611528 - 4611579
Alignment:
Q  201 cacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||| ||| ||||||||||||||| ||| ||||||||| ||||||||||    
T  4611528 cacaccgacaccgctaataatttgagaaaataacataattcagtgtaattat 4611579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 252
Target Start/End: Original strand, 14731714 - 14731757
Alignment:
Q  209 cactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||||||||||| ||||||||||||  ||||||||||    
T  14731714 cactgctaataatttgagaaaatcacataatttagtgtaattat 14731757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 22197836 - 22197757
Alignment:
Q  172 acggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    |||||||||| | ||||||||||||| ||||| ||  ||| ||||||||||||| | | ||||||||||  |||||||||    
T  22197836 acggacaccggacacgacacagacactaacacgccaacacagctaataatttgaaaaattcacataatttagtgtaatta 22197757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 24669383 - 24669477
Alignment:
Q  156 tctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    ||||| |||||||||||||||||| ||  |||||||||||||  |||| | | ||| | ||||||||||||  ||| ||||||||| |||||||||    
T  24669383 tctataaagcatggatacggacacggac-acgacacagacactgacacgctgacaccgttaataatttgaggaaattacataattcagtgtaatta 24669477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 34897091 - 34897130
Alignment:
Q  213 gctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  34897091 gctaataatttgagaaaatcacataattcagtgtaattat 34897130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 39954352 - 39954293
Alignment:
Q  193 gacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||| |||| ||| ||| ||||||||||||||| ||||||||||||  ||||||||||    
T  39954352 gacaccgacacgccgacaccgctaataatttgagaaaatcacataatttagtgtaattat 39954293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 8343294 - 8343360
Alignment:
Q  185 acgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    ||||||| |||||| |||||||| ||  ||||||||||||| | ||||||||||||  |||||||||    
T  8343294 acgacactgacaccgacacaccgacatagctaataatttgaaaaaatcacataatttagtgtaatta 8343360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 14134706 - 14134744
Alignment:
Q  214 ctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  14134706 ctaataatttgagaaaatcacataattcagtgtaattat 14134744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 40332193 - 40332235
Alignment:
Q  209 cactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    |||||| |||||||||||| ||||||||||||| |||||||||    
T  40332193 cactgcaaataatttgagaaaatcacataattcagtgtaatta 40332235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 24196705 - 24196628
Alignment:
Q  158 tatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcaca 235  Q
    ||||||| | |||||| |||||||||||||| || |||||| |||| ||| |||  |||||||||||| | |||||||    
T  24196705 tatgaagtacggatacagacaccgaatacgatacggacaccgacacgccgacacaactaataatttgaaaaaatcaca 24196628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 7658428 - 7658508
Alignment:
Q  172 acggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||| || |||| ||||||||| | | || ||| |||  |||||||||||||| ||| ||||||||| ||||||||||    
T  7658428 acggacatcggatacaacacagacatcgatacgccgacaccactaataatttgagaaaattacataattcagtgtaattat 7658508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 27213540 - 27213592
Alignment:
Q  200 acacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||| ||| ||||||||||||||| ||| |||||||||||||  |||||||||    
T  27213540 acacgccgacactgctaataatttcagaaaatcacataattcactgtaattat 27213592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 30204141 - 30204066
Alignment:
Q  1 ctaaattgaaggaatatatgatgaagcatttcagagagttcaggcatatctattgctctcctttaaagcaggtaaa 76  Q
    |||||||| | |||||| | | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30204141 ctaaattggaagaatatttaaagaagcatttcagagagttcaggcatgtctattgctctcctttaaagcaggtaaa 30204066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 51483105 - 51483177
Alignment:
Q  4 aattgaaggaatatatgatgaagcatttcagagagttcaggcatatctattgctctcctttaaagcaggtaaa 76  Q
    ||||| |||||||| | | ||||||||||| ||||||||||||| || |||||||||||||||||||||||||    
T  51483105 aattggaggaatatttaaagaagcatttcaaagagttcaggcatgtccattgctctcctttaaagcaggtaaa 51483177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 51499939 - 51500014
Alignment:
Q  1 ctaaattgaaggaatatatgatgaagcatttcagagagttcaggcatatctattgctctcctttaaagcaggtaaa 76  Q
    |||| ||| |||||||| | | ||||||||||||||||||||||||| || | | |||||||||||||||||||||    
T  51499939 ctaagttggaggaatatttaaagaagcatttcagagagttcaggcatgtccactcctctcctttaaagcaggtaaa 51500014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 34712450 - 34712397
Alignment:
Q  199 aacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||||||||||||||||||||| ||| ||||||||  ||||||||||    
T  34712450 aacacaccgtcactgctaataatttgagaaaataacataatttagtgtaattat 34712397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 398858 - 398779
Alignment:
Q  173 cggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||| | ||||||| |||||  |||| ||| ||| ||||||||||||| | ||||||||||||| ||||||||||    
T  398858 cggacaccggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaattat 398779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 252
Target Start/End: Original strand, 40181873 - 40181916
Alignment:
Q  209 cactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||    
T  40181873 cactgctaataatttgagaaaatcacataattcagtgtaattat 40181916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 51458536 - 51458607
Alignment:
Q  3 aaattgaaggaatatatgatgaagcatttcagagagttcaggcatatctattgctctcctttaaagcaggta 74  Q
    ||||||||||||||| |   ||||||||||||||||||||| ||| || |||||  ||||||||||||||||    
T  51458536 aaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaaagcaggta 51458607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 36878441 - 36878506
Alignment:
Q  187 gacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||| ||||||  |||| ||| ||| ||||||||||||||| ||||||||||||| ||||||||||    
T  36878441 gacatagacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattat 36878506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 38503300 - 38503365
Alignment:
Q  187 gacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||| ||||| ||||||||| ||| ||||||||||||||| ||||| ||| ||| ||||||||||    
T  38503300 gacacggacactaacacaccgacaccgctaataatttgagaaaatcatatatttcagtgtaattat 38503365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 17754280 - 17754352
Alignment:
Q  176 acaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaa 248  Q
    |||||| ||||||||||||| |  |||||||| ||| ||||||||||||| | ||| ||||||||| ||||||    
T  17754280 acaccgtatacgacacagacgctgacacaccgacaccgctaataatttgaaaaaattacataattcagtgtaa 17754352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 34298429 - 34298481
Alignment:
Q  200 acacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||| |||  |||||||||||||| ||||||||||||| ||||||||||    
T  34298429 acacaccgacaccactaataatttgagaaaatcacataattcagtgtaattat 34298481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 251
Target Start/End: Complemental strand, 10572687 - 10572604
Alignment:
Q  168 ggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    |||||||||||||| | ||||||   ||||  |||| ||| |||  |||||||||||||| ||||||||||||| |||||||||    
T  10572687 ggatacggacaccggacacgacatgaacactgacacgccgacaccactaataatttgagaaaatcacataattcggtgtaatta 10572604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 13436444 - 13436503
Alignment:
Q  193 gacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||| ||||| ||| ||||||||||||||| ||  ||||||||||||| ||||||||||    
T  13436444 gacacgaacacgccgacactgctaataatttaaggaaatcacataattcagtgtaattat 13436503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 252
Target Start/End: Original strand, 19324564 - 19324607
Alignment:
Q  209 cactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||||    
T  19324564 cactgctgataatttgagaaaatcacataattcagtgtaattat 19324607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 25452205 - 25452162
Alignment:
Q  209 cactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||    
T  25452205 cactgctaataatttgagaaaatctcataattcagtgtaattat 25452162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 1864944 - 1864894
Alignment:
Q  202 acaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||| ||| | ||||||||||||| ||||||||||||| ||||||||||    
T  1864944 acaccgacacagttaataatttgagaaaatcacataattcagtgtaattat 1864894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 5376581 - 5376515
Alignment:
Q  185 acgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    ||||||| ||||| ||||| ||| ||| ||||||||||| ||| ||| ||||||||| |||||||||    
T  5376581 acgacacggacactaacacgccgacaccgctaataatttaagaaaataacataattcagtgtaatta 5376515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 7918263 - 7918225
Alignment:
Q  214 ctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  7918263 ctaataatttgagaaaatcacataattcagtgtaattat 7918225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 250
Target Start/End: Complemental strand, 12443526 - 12443476
Alignment:
Q  200 acacaccgtcactgctaataatttgagataatcacataattctgtgtaatt 250  Q
    |||| ||| ||| ||||||||||||||| ||||||||||||| ||||||||    
T  12443526 acacgccgacacagctaataatttgagaaaatcacataattcagtgtaatt 12443476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 19562724 - 19562635
Alignment:
Q  162 aagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||||||| ||||||| | || ||||  ||||  |||| ||| ||||||||||||||||||| |||| |||| ||| ||||||||||    
T  19562724 aagcatggatacagacaccggacac-acacgaacactgacacgccgacactgctaataatttgagaaaatctcatagttcagtgtaattat 19562635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 31015049 - 31015087
Alignment:
Q  213 gctaataatttgagataatcacataattctgtgtaatta 251  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  31015049 gctaataatttgagaaaatcacataattcagtgtaatta 31015087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 252
Target Start/End: Complemental strand, 1486823 - 1486723
Alignment:
Q  158 tatgaagcatggatacggacaccga------atacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    |||||||||||||||||||||| ||      ||||||||| || ||  |||| | | ||| ||||||||||||| | ||||||||||||| |||||||||    
T  1486823 tatgaagcatggatacggacacggataccggatacgacacggatactgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaatta 1486724  T
Q  252 t 252  Q
    |    
T  1486723 t 1486723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 27471646 - 27471581
Alignment:
Q  186 cgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    ||||||| ||||  ||||||||  || ||||||||||||||| || |||||||||| |||||||||    
T  27471646 cgacacaaacactgacacaccgataccgctaataatttgagaaaagcacataattcagtgtaatta 27471581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 30749789 - 30749833
Alignment:
Q  154 aatctatgaagcatggatacggacaccgaatacgacacagacacc 198  Q
    |||||| ||||||||||||||||||||| | ||||||| ||||||    
T  30749789 aatctacgaagcatggatacggacaccggacacgacacggacacc 30749833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 30771240 - 30771284
Alignment:
Q  154 aatctatgaagcatggatacggacaccgaatacgacacagacacc 198  Q
    |||||| ||||||||||||||||||||| | ||||||| ||||||    
T  30771240 aatctacgaagcatggatacggacaccggacacgacacggacacc 30771284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 252
Target Start/End: Complemental strand, 7328800 - 7328705
Alignment:
Q  157 ctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||||| |||||||||||||||| ||||||||||||  |||||  ||  |||||||||||||||||| ||| ||||||||  ||||||||||    
T  7328800 ctatgaagcacggatacggacaccgaacacgacacagacattaacacgtcgatactgctaataatttgagaaaataacataatttagtgtaattat 7328705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 251
Target Start/End: Original strand, 27944991 - 27945085
Alignment:
Q  157 ctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    |||||||||| |||||||||||||| | ||||||| |||||  |||| ||| |||  |||||||||||||| ||| ||||||||| |||||||||    
T  27944991 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaattacataattcagtgtaatta 27945085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 19206028 - 19206084
Alignment:
Q  185 acgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattc 241  Q
    ||||||| ||||||||||| ||| ||| ||||||||||||||| |||||||||||||    
T  19206028 acgacacggacaccaacacgccgacaccgctaataatttgagaaaatcacataattc 19206084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 20549771 - 20549836
Alignment:
Q  187 gacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||| ||||  |||||||| ||| ||||||||||||||| |||||| |||||| ||||||||||    
T  20549771 gacacatacactgacacaccgacaccgctaataatttgagaaaatcacgtaattcagtgtaattat 20549836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 29787436 - 29787383
Alignment:
Q  199 aacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||| ||| ||| ||||||||||||||| ||||||||||||| ||||||||||    
T  29787436 aacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattat 29787383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 11061170 - 11061102
Alignment:
Q  172 acggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataatt 240  Q
    ||||||| || ||||||||| |||||  |||||||| ||| ||||||||||||| | ||||||||||||    
T  11061170 acggacatcggatacgacacggacactgacacaccgacacagctaataatttgaaaaaatcacataatt 11061102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 2424620 - 2424659
Alignment:
Q  213 gctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  2424620 gctaataatttgagaaaatcacataattcagtgtaattat 2424659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 252
Target Start/End: Original strand, 12289116 - 12289159
Alignment:
Q  209 cactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||||||||||| ||||||||||||| ||| ||||||    
T  12289116 cactgctaataatttgagaaaatcacataattcagtggaattat 12289159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 24339603 - 24339686
Alignment:
Q  168 ggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    |||||||||||||| | ||||||  ||||   |||| ||| ||| ||||||||||||| | ||||||||||||| |||||||||    
T  24339603 ggatacggacaccggacacgacatggacattgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 24339686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 250
Target Start/End: Original strand, 32308113 - 32308163
Alignment:
Q  200 acacaccgtcactgctaataatttgagataatcacataattctgtgtaatt 250  Q
    |||| ||| ||| ||||||||||||||| ||||||||||||| ||||||||    
T  32308113 acacgccgacaccgctaataatttgagaaaatcacataattcagtgtaatt 32308163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 1433419 - 1433499
Alignment:
Q  172 acggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||||||| ||||||| ||||   |||| ||| ||| | ||||||||||||| |||||||| |||  ||||||||||    
T  1433419 acggacaccgaacacgacacggacattgacacgccgacaccgttaataatttgagaaaatcacatcatttggtgtaattat 1433499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 17851396 - 17851476
Alignment:
Q  172 acggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||||| | ||||||  || ||| ||||| ||  || ||||||||||| ||| ||||||||||||| ||||||||||    
T  17851396 acggacaccggacacgacatggataccgacacatcgataccgctaataattttagaaaatcacataattcagtgtaattat 17851476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 28155562 - 28155614
Alignment:
Q  199 aacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    ||||| ||| ||| ||||||||||||||| ||| ||||||||| |||||||||    
T  28155562 aacacgccgacaccgctaataatttgagaaaattacataattcggtgtaatta 28155614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 45056958 - 45056926
Alignment:
Q  209 cactgctaataatttgagataatcacataattc 241  Q
    ||||||||||||||||||| |||||||||||||    
T  45056958 cactgctaataatttgagaaaatcacataattc 45056926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 252
Target Start/End: Original strand, 3398564 - 3398663
Alignment:
Q  152 ataatctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    |||| |||||||||||||||||||||| |||| ||||||| |||||  |||| ||| ||| ||||||||||||| | ||||| ||||||| |||||||||    
T  3398564 ataagctatgaagcatggatacggacatcgaacacgacacggacactgacacgccgacacagctaataatttga-aaaatcatataattcagtgtaatta 3398662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 9027143 - 9027223
Alignment:
Q  172 acggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||| ||| | ||||||| |||||  |||| ||| ||| ||||||||||||||||||||||||||||| ||||||||||    
T  9027143 acggactccggacacgacacggacactgacacgccgacaccgctaataatttgagataatcacataattccgtgtaattat 9027223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 7086773 - 7086840
Alignment:
Q  185 acgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||||||||| ||||  || ||||||||||||||||||| ||||||||||||  ||||||||||    
T  7086773 acgacacagacaccgacacgtcggcactgctaataatttgagaaaatcacataatttagtgtaattat 7086840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 8805653 - 8805586
Alignment:
Q  185 acgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||||||||| ||||  || ||||||||||||||||||| ||||||||||||  ||||||||||    
T  8805653 acgacacagacaccgacacgtcggcactgctaataatttgagaaaatcacataatttagtgtaattat 8805586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 252
Target Start/End: Complemental strand, 30866253 - 30866158
Alignment:
Q  157 ctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||| | | |||||||||||| | | ||||| |||||| |||||||  ||| ||||||||||||||| |||||||||||||  |||||||||    
T  30866253 ctatgaagtacgaatacggacaccggacatgacactgacaccgacacaccaacaccgctaataatttgagaaaatcacataattcaatgtaattat 30866158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 9025551 - 9025508
Alignment:
Q  209 cactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||    
T  9025551 cactgctaataatttgagaaaatcacataattcagtgtaattat 9025508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 9107464 - 9107385
Alignment:
Q  172 acggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    |||||||||| | ||||||| ||||| ||||| ||| ||| ||||||||||||| | ||||||| ||||| |||||||||    
T  9107464 acggacaccggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatcacaaaattcagtgtaatta 9107385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 251
Target Start/End: Complemental strand, 25038185 - 25038086
Alignment:
Q  152 ataatctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    ||||||||||||||| |||||||||||  |||||||||||||| ||  ||||   | ||| | ||||||||||||| ||| ||||||||  |||||||||    
T  25038185 ataatctatgaagcacggatacggacattgaatacgacacagatactgacacgttgacaccgttaataatttgagaaaattacataatttagtgtaatta 25038086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 8365628 - 8365534
Alignment:
Q  157 ctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    |||||||||| |||||||||||||  | ||||||| |||||  |||| ||| |||  |||||||||||| |  |||||||||||| |||||||||    
T  8365628 ctatgaagcacggatacggacaccagacacgacacggacactgacacgccgacacaactaataatttgaaaatatcacataattcggtgtaatta 8365534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 252
Target Start/End: Original strand, 9658832 - 9658924
Alignment:
Q  159 atgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||| |||||| ||||| ||  ||||||| |||||  |||| ||| ||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  9658832 atgaagcacggatacagacacagac-acgacacggacactgacacgccgacaccgctaataatttaagaaaatcacataattcagtgtaattat 9658924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 1681726 - 1681802
Alignment:
Q  175 gacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    ||||||||| |||||||| |||| ||||| ||| |||  |||||||||||| | |||||| |||||| |||||||||    
T  1681726 gacaccgaacacgacacatacactaacacgccgacacaactaataatttgaaaaaatcacgtaattcagtgtaatta 1681802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 251
Target Start/End: Original strand, 12696277 - 12696368
Alignment:
Q  159 atgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    |||||||| |||||||||||| ||  ||||||| |||||  |||| ||| ||| ||||||||||||| | ||| ||||||||| |||||||||    
T  12696277 atgaagcacggatacggacacggac-acgacacggacactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaatta 12696368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 19040345 - 19040397
Alignment:
Q  200 acacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||| ||| ||| ||||||||||||||| ||||||||||||| ||||||||||    
T  19040345 acacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattat 19040397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 26562682 - 26562734
Alignment:
Q  200 acacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||| ||| ||||||||| ||||||||| ||||||||||||| ||||||||||    
T  26562682 acacgccgacactgctaaaaatttgagaaaatcacataattcagtgtaattat 26562734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 7265646 - 7265607
Alignment:
Q  213 gctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  7265646 gctaataatttgagaaaatcacataattcagtgtaattat 7265607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 7996435 - 7996392
Alignment:
Q  209 cactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||    
T  7996435 cactgctaataatttgagaaaatcatataattcagtgtaattat 7996392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 252
Target Start/End: Original strand, 8022366 - 8022409
Alignment:
Q  209 cactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||    
T  8022366 cactgctaataatttgagaaaatcatataattcagtgtaattat 8022409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 251
Target Start/End: Original strand, 16766662 - 16766741
Alignment:
Q  172 acggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    |||||||||| | ||||||  |||||  |||| ||| ||| ||||||||||||| | ||||||||||||| |||||||||    
T  16766662 acggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 16766741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 10649275 - 10649313
Alignment:
Q  154 aatctatgaagcatggatacggacaccgaatacgacaca 192  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  10649275 aatctatgaagcacggatacggacaccggatacgacaca 10649313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 252
Target Start/End: Complemental strand, 11784308 - 11784230
Alignment:
Q  174 ggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||| ||||||||||||||||| |||| ||  |||   ||||||||||||| |||||||| | || ||||||||||    
T  11784308 ggacacctaatacgacacagacaccgacacgcccacacatataataatttgagaaaatcacatgaatcagtgtaattat 11784230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 19044432 - 19044509
Alignment:
Q  175 gacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||||||||  |||||  |||| ||| |||  ||||||||||||||  |||||||||||| |||| |||||    
T  19044432 gacaccgaatacgacatggacactgacacgccgacacgactaataatttgagaatatcacataattcagtgttattat 19044509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 31579276 - 31579239
Alignment:
Q  215 taataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  31579276 taataatttgagaaaatcacataattcagtgtaattat 31579239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 31959111 - 31959203
Alignment:
Q  158 tatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    ||||||||| |||||||||||| ||  | |||||  ||||  |||| ||||||| ||||||||||||| | ||||||||||| | |||||||||    
T  31959111 tatgaagcacggatacggacacggac-atgacacgaacactgacacgccgtcacagctaataatttgaaaaaatcacataatgcagtgtaatta 31959203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 252
Target Start/End: Complemental strand, 21782927 - 21782832
Alignment:
Q  157 ctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||||| | |||| ||||| | | |||||||| ||||  |||| ||| ||||||||||||||||||| ||||||||||||| ||||||||||    
T  21782927 ctatgaagcacgaatacagacactggacacgacacaaacactgacacgccgacactgctaataatttgagaaaatcacataattcagtgtaattat 21782832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 21616740 - 21616807
Alignment:
Q  185 acgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||| |||||  |||| ||| ||| ||||||||||||||| ||||||||||||| ||||||||||    
T  21616740 acgacacggacacggacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattat 21616807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 252
Target Start/End: Original strand, 23717977 - 23718071
Alignment:
Q  157 ctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||||| |||||| ||||| ||  | ||||| |||||  |||||||| ||| ||||||||||||||| | ||||||||||| ||||||||||    
T  23717977 ctatgaagcacggatacagacacggac-atgacacggacactgacacaccgacaccgctaataatttgagaaagtcacataattcagtgtaattat 23718071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 252
Target Start/End: Original strand, 24105649 - 24105743
Alignment:
Q  157 ctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||||| |||||| ||||| ||  | ||||| |||||  |||||||| ||| ||||||||||||||| | ||||||||||| ||||||||||    
T  24105649 ctatgaagcacggatacagacacggac-atgacacggacactgacacaccgacaccgctaataatttgagaaagtcacataattcagtgtaattat 24105743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 21624217 - 21624282
Alignment:
Q  158 tatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataattt 223  Q
    ||||||||  |||||||||||||||| |||||||||||||  |||| ||| ||| |||||||||||    
T  21624217 tatgaagcccggatacggacaccgaacacgacacagacactgacacgccgacacagctaataattt 21624282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 18420535 - 18420459
Alignment:
Q  165 catggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattc 241  Q
    |||||| |||||||||||| |||| ||| | ||  |||| ||  ||||||||||||||||||| |||||||||||||    
T  18420535 catggacacggacaccgaacacgagacatatactgacacgccaacactgctaataatttgagaaaatcacataattc 18420459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 21374809 - 21374714
Alignment:
Q  157 ctatgaagcatggatacggacaccga-atacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    |||||||||| |||||||||||| || |   ||||| ||||| ||||| ||| ||| ||||||||||||| | ||| ||||||||| |||||||||    
T  21374809 ctatgaagcacggatacggacacggacaccggacacggacactaacacgccgacacagctaataatttgaaaaaattacataattcagtgtaatta 21374714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 19536510 - 19536412
Alignment:
Q  154 aatctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttg-agataatcacataattctgtgtaatta 251  Q
    |||||||||||||  ||||||||||||| | ||||||| ||||   |||| ||| |||  ||||||||||| | | ||||||||||||| |||||||||    
T  19536510 aatctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaaatcacataattcagtgtaatta 19536412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 20539783 - 20539689
Alignment:
Q  157 ctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    |||||||||| |||||||||||| | | ||||||| |||||  ||||  || ||| ||||||||||||| | ||||| ||||||  |||||||||    
T  20539783 ctatgaagcacggatacggacactggacacgacacggacactgacacgtcgacacagctaataatttgaaaaaatcatataatttagtgtaatta 20539689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 41942060 - 41942150
Alignment:
Q  162 aagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||| |||||||||| ||  |||||||||||||||  |||| | ||||| | ||| ||||||||| ||| ||||||||| || |||||||    
T  41942060 aagcacggatacggacgcctgatacgacacagacactgacacgcagtcaccgttaaaaatttgagaaaattacataattcagtataattat 41942150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 6940203 - 6940271
Alignment:
Q  155 atctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataattt 223  Q
    ||||||||| || ||||||||||| | |||||||||| |||||  |||| ||| ||| |||||||||||    
T  6940203 atctatgaaacacggatacggacatcaaatacgacacggacactgacacgccgacacagctaataattt 6940271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 18276486 - 18276566
Alignment:
Q  172 acggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||||| | |||| ||||||||  | |  ||| ||| ||||||||||||||| |||||| |||||| ||||||||||    
T  18276486 acggacaccggacacgatacagacactgatatgccgacaccgctaataatttgagaaaatcacttaattcagtgtaattat 18276566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 31284041 - 31284093
Alignment:
Q  200 acacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||| ||| ||||||||||||||||||| ||||||||||| |  |||||||||    
T  31284041 acacgccgacactgctaataatttgagaaaatcacataatccattgtaattat 31284093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 31808070 - 31808122
Alignment:
Q  200 acacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||| ||| ||||||||||| | | ||||||||||||| ||||||||||    
T  31808070 acacaccgacaccgctaataatttaacaaaatcacataattcagtgtaattat 31808122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 42832342 - 42832290
Alignment:
Q  200 acacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||| ||| ||||||||||||||| ||| ||||| ||| ||||||||||    
T  42832342 acacaccgacaccgctaataatttgagaaaattacatatttcagtgtaattat 42832290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 251
Target Start/End: Original strand, 13345 - 13444
Alignment:
Q  152 ataatctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    |||| |||||||||| |||||||||||||| | | ||||| |||||  |||| ||| |||  |||||||||||||| ||||||||||||| ||| |||||    
T  13345 ataaactatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatcacataattcagtgcaatta 13444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 251
Target Start/End: Complemental strand, 21982 - 21883
Alignment:
Q  152 ataatctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    |||| |||||||||| |||||||||||||| | | ||||| |||||  |||| ||| |||  |||||||||||||| ||||||||||||| ||| |||||    
T  21982 ataaactatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatcacataattcagtgcaatta 21883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 251
Target Start/End: Original strand, 20122 - 20216
Alignment:
Q  157 ctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    ||||||||||  ||||||||||||| | ||||||| ||||   |||| ||| ||| ||||||||||||| | ||||||||||||| |||||||||    
T  20122 ctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 20216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 14126192 - 14126125
Alignment:
Q  185 acgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||||| ||||| ||| ||||| ||||||||||| | | ||||||||||| ||||||||||    
T  14126192 acgacacagacactaacacgccgacactgttaataatttgataaagtcacataattcagtgtaattat 14126125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 903915 - 903967
Alignment:
Q  200 acacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||| ||| | ||||||||||||| ||||||||||||| ||||||||||    
T  903915 acacaccggcaccgttaataatttgagaaaatcacataattcagtgtaattat 903967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 8423780 - 8423732
Alignment:
Q  204 accgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||| ||| ||||||||||||||| ||||||||||||| ||||||||||    
T  8423780 accgacaccgctaataatttgagaaaatcacataattcagtgtaattat 8423732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 24343472 - 24343552
Alignment:
Q  172 acggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||||| | ||||||| ||| || |||| ||| ||| | ||||||||||||| ||| ||||||||| ||||||||||    
T  24343472 acggacaccggacacgacacggacgccgacacgccgacacggataataatttgagaaaattacataattcagtgtaattat 24343552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 15659817 - 15659774
Alignment:
Q  209 cactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||    
T  15659817 cactgctaataatttgagaaaatctcataattcggtgtaattat 15659774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 252
Target Start/End: Original strand, 56257935 - 56257978
Alignment:
Q  209 cactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||    
T  56257935 cactgctaataatttgagaaaatcatataattcagtgtaattat 56257978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 18576093 - 18576051
Alignment:
Q  210 actgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||| ||||||||||| ||||||||||||| ||||||||||    
T  18576093 actgctgataatttgagaaaatcacataattcggtgtaattat 18576051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 36635331 - 36635369
Alignment:
Q  214 ctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  36635331 ctaataatttgagaaaatcacataattcagtgtaattat 36635369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 753044 - 752948
Alignment:
Q  155 atctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataa-tcacataattctgtgtaatta 251  Q
    |||||||||||| |||||| ||||| ||  |||||||| || | ||||||||| ||| ||||||||||| | | || ||||||||||| |||||||||    
T  753044 atctatgaagcacggatacagacacggac-acgacacatactctaacacaccgacacagctaataatttaaaaaaaatcacataattcagtgtaatta 752948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 22440651 - 22440614
Alignment:
Q  215 taataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  22440651 taataatttgagaaaatcacataattcagtgtaattat 22440614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 40613443 - 40613495
Alignment:
Q  200 acacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||| ||| ||| ||||||| ||||||| ||||||||||||| ||||||||||    
T  40613443 acacgccgacaccgctaatattttgagaaaatcacataattcagtgtaattat 40613495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 252
Target Start/End: Complemental strand, 8789652 - 8789564
Alignment:
Q  158 tatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||| |||||||||||||| | || ||||||||||      |||| ||| ||| ||||||||||| ||||||||||||| ||||||||||    
T  8789652 tatgaagcacggatacggacaccggacacaacacagacac------accgacacggcttataatttgagaaaatcacataattccgtgtaattat 8789564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 11313864 - 11313814
Alignment:
Q  202 acaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||| ||||||||||||||||||| ||||||||||||  ||||||||||    
T  11313864 acaccgacactgctaataatttgagaaaatcacataatttagtgtaattat 11313814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 11665903 - 11665989
Alignment:
Q  166 atggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||| ||||||| | |||||||| |||| ||||||||| ||  ||||||||||||| | ||||||| ||||  ||||||||||    
T  11665903 atggatacagacaccggacacgacacacacactaacacaccgacaacgctaataatttgataaaatcacacaatttagtgtaattat 11665989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 252
Target Start/End: Complemental strand, 34307895 - 34307794
Alignment:
Q  157 ctatgaagcatggatacggacac------cgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatt 250  Q
    |||||||||||||||||||||||      || | | ||||||||||| ||||| | | ||| ||||||||||||||| ||||||||| ||| ||||||||    
T  34307895 ctatgaagcatggatacggacacgaacaccggacatgacacagacacgaacacgctgacaccgctaataatttgagaaaatcacatatttcagtgtaatt 34307796  T
Q  251 at 252  Q
    ||    
T  34307795 at 34307794  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 36549947 - 36550001
Alignment:
Q  23 gaagcatttcaga-gagttcaggcatatctattgctctcctttaaagcaggtaaa 76  Q
    ||||||||||||| |||||||||||| || | |||||||||||||||||||||||    
T  36549947 gaagcatttcagaagagttcaggcatgtccactgctctcctttaaagcaggtaaa 36550001  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 251
Target Start/End: Original strand, 55401025 - 55401119
Alignment:
Q  157 ctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    ||||||||||  ||||||||||||| ||||||||| |||||  | || ||| |||  |||||||||||| | ||||||||||||  |||||||||    
T  55401025 ctatgaagcacagatacggacaccggatacgacacggacactgatacgccgacacaactaataatttgaaaaaatcacataatttagtgtaatta 55401119  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 5441129 - 5441056
Alignment:
Q  169 gatacggaca-ccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattc 241  Q
    |||||||||| ||| | |||||||||||||  |||| ||||||| ||||| ||||||||| |||||||||||||    
T  5441129 gatacggacatccggacacgacacagacactgacacgccgtcaccgctaaaaatttgagaaaatcacataattc 5441056  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 8383206 - 8383302
Alignment:
Q  156 tctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||| |||| ||| |||||||| | | ||||||| ||||   |||| ||| ||| ||||||||||||||| ||||| ||||||| ||||||||||    
T  8383206 tctatgtagcacggacacggacactggacacgacacggacattgacacgccgacaccgctaataatttgagaaaatcatataattcagtgtaattat 8383302  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 11251983 - 11252023
Alignment:
Q  212 tgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  11251983 tgctaataatttgagaaaatcacataattcagtgtaattat 11252023  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 4466710 - 4466619
Alignment:
Q  156 tctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgta 247  Q
    |||||||||||||||||||||||||| | | |||||  ||||  |||| ||| ||| | ||||||||| ||| ||||| ||||||| |||||    
T  4466710 tctatgaagcatggatacggacaccggacatgacacgaacactgacactccgacaccggtaataatttaagaaaatcatataattcagtgta 4466619  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 4991061 - 4990982
Alignment:
Q  172 acggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    |||||||||||| ||||||| || ||  |||| ||| ||| ||||||| ||||||| ||| ||||||||| |||||||||    
T  4991061 acggacaccgaacacgacacggagactgacactccgacaccgctaatagtttgagaaaattacataattcagtgtaatta 4990982  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 252
Target Start/End: Original strand, 9624643 - 9624686
Alignment:
Q  209 cactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||||||||||| |||||||||||||  |||||||||    
T  9624643 cactgctaataatttgagaaaatcacataattcaatgtaattat 9624686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 27277895 - 27277852
Alignment:
Q  209 cactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||||||||||| ||||||||||||  ||||||||||    
T  27277895 cactgctaataatttgagaaaatcacataatttagtgtaattat 27277852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 41961744 - 41961665
Alignment:
Q  172 acggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    |||||||||| | |||||||||||||  |||| |||||||  |||||||||||| |  ||||||| |||| |||||||||    
T  41961744 acggacaccggacacgacacagacactgacacgccgtcacaactaataatttgaaaatatcacattattcggtgtaatta 41961665  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 7928445 - 7928495
Alignment:
Q  202 acaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||| ||| ||||||||||||| | ||||||||||||| ||||||||||    
T  7928445 acaccgacaccgctaataatttgaaaaaatcacataattcagtgtaattat 7928495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 252
Target Start/End: Original strand, 25064857 - 25064954
Alignment:
Q  155 atctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||| || || ||| ||||||| | ||||||||||||   |||| ||| ||| |||||| |||||| | ||||||||||||  ||||||||||    
T  25064857 atctatgaaacacgggtacagacaccggacacgacacagacattgacacgccgacaccgctaatgatttgaaaaaatcacataatttagtgtaattat 25064954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 16000110 - 16000034
Alignment:
Q  172 acggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaa 248  Q
    |||||||||||| |||||||||||||  |||| ||| |||  |||||||||| | | ||| ||||||||| ||||||    
T  16000110 acggacaccgaacacgacacagacactgacacgccgacacaactaataatttaaaaaaataacataattcagtgtaa 16000034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 16192816 - 16192764
Alignment:
Q  200 acacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||| ||| | ||||||||||||| ||| ||||||||| ||||||||||    
T  16192816 acacaccgacaccgttaataatttgagaaaataacataattcagtgtaattat 16192764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 24205135 - 24205055
Alignment:
Q  172 acggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||||| | ||||||| |||||  |||| ||| ||| | ||||||||||||| ||| ||||||| | ||||||||||    
T  24205135 acggacaccggacacgacacggacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattat 24205055  T

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Target: scaffold1528 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 1004 - 1076
Alignment:
Q  176 acaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaa 248  Q
    |||||| ||||||||||||| |  |||||||| ||| ||||||||||||| | ||| ||||||||| ||||||    
T  1004 acaccgtatacgacacagacgctgacacaccgacaccgctaataatttgaaaaaattacataattcagtgtaa 1076  T

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Target: scaffold0652 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 556 - 477
Alignment:
Q  172 acggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    |||||||||||| ||| ||| |||||  | || ||| ||||||||||||||||| | ||||||| ||||| |||||||||    
T  556 acggacaccgaacacgccacggacactgatacgccgacactgctaataatttgaaaaaatcacaaaattcagtgtaatta 477  T

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Target: scaffold0279 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 17979 - 17904
Alignment:
Q  157 ctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatc 232  Q
    |||||||||| |||||||||||| | | |||| ||| |||||||||| ||  ||| ||||||||||||||| ||||    
T  17979 ctatgaagcacggatacggacactggacacgatacaaacaccaacacgcctacaccgctaataatttgagaaaatc 17904  T

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Target: scaffold0171 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 252
Target Start/End: Original strand, 23367 - 23465
Alignment:
Q  153 taatctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||||||||| ||||||||||| || | |||||||||||||  |||| ||| ||| | |||||| |  | | ||||||||||||| ||||||||||    
T  23367 taatctatgaagcacggatacggaca-cggacacgacacagacactgacacgccgacacagataataactcaaaaaaatcacataattcagtgtaattat 23465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 263429 - 263386
Alignment:
Q  209 cactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    ||||||||||||||||||| || |||||||||| ||||||||||    
T  263429 cactgctaataatttgagaaaaccacataattcagtgtaattat 263386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 4994 - 4898
Alignment:
Q  155 atctatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataa-tcacataattctgtgtaatta 251  Q
    |||||||||||| |||||| ||||| ||  |||||||| || | ||||||||| ||| ||||||||||| | | || ||||||||||| |||||||||    
T  4994 atctatgaagcacggatacagacacggac-acgacacatactctaacacaccgacacagctaataatttaaaaaaaatcacataattcagtgtaatta 4898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 251
Target Start/End: Complemental strand, 192356 - 192264
Alignment:
Q  158 tatgaagcatggatacggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    |||||| ||||||||||||||| ||  |||| || |||||  |||| ||| ||| | ||||||||||||| ||| ||||||||| |||||||||    
T  192356 tatgaaacatggatacggacacagac-acgatacggacactgacacgccgacaccgttaataatttgagaaaattacataattcggtgtaatta 192264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 51791 - 51855
Alignment:
Q  187 gacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaatta 251  Q
    ||||| |||||  |||| ||| ||| ||||||||||||| | ||||||||||||| |||||||||    
T  51791 gacacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 51855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 53189 - 53225
Alignment:
Q  216 aataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  53189 aataatttgagaaaatcacataattcagtgtaattat 53225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 241559 - 241639
Alignment:
Q  172 acggacaccgaatacgacacagacaccaacacaccgtcactgctaataatttgagataatcacataattctgtgtaattat 252  Q
    |||||||||| | ||||||| |||||  |||| ||| ||| ||||||||||||  | ||||||||||||  ||||||||||    
T  241559 acggacaccggacacgacacggacactgacacgccgacacagctaataatttggaaaaatcacataatttagtgtaattat 241639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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