View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_high_13 (Length: 607)
Name: NF17763_high_13
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 64 - 591
Target Start/End: Complemental strand, 7387904 - 7387374
Alignment:
| Q |
64 |
ctttagggaatggatatgtggttttagctacacatggccacaaattggatctgcctctgacaacagtcattgtatcatatttaagtggacaaaatgatcc |
163 |
Q |
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| T |
7387904 |
ctttagggaatggatatgtggttttagccacacatggccacaaattggatctgcctctgacaacagtcattgtatcatatttaagtggacaaaatgatcc |
7387805 |
T |
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| Q |
164 |
ttctgttgtatgatatattgattcagactatgcttgtgatatgctaaaggatctatttgttgaaaatcatttgatcaattcatagtggcaatgtctgaaa |
263 |
Q |
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| T |
7387804 |
ttctgttgtaggatatattgattcagactatgcttgtgatatgctaaaggatctatttgttgaaaatcatttggtcaattcatagtggcaatgtctgaaa |
7387705 |
T |
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| Q |
264 |
ttgaagagtagtacatagtagtaattaaggttgtcaaagagatcttacattttacatgattagagaggggattgggtgttgagcaagttggagttcaatt |
363 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||| ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
7387704 |
ttgaagagtagtacatagcagtagttaaggttgtcaaagaggtcttacagtttacatgattagagagggaactgggtgttgagcaagttggagttcaatt |
7387605 |
T |
|
| Q |
364 |
acattgtgatagtaagagtgtcatttatttaataaataattaggtgagacctaatacattaatgtgaagtttcnnnnnnntcaaagttatttgcatgtga |
463 |
Q |
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| T |
7387604 |
acattgtcgtagtacgagtgtcatttatttaataaataatcaggtgagacctaatacattcatgtgaagtttcaaaaaaatcagagttatttgcatgtga |
7387505 |
T |
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| Q |
464 |
aaagatatgtatattagagaatgcaattgatatgtttgaccaagtcaatcaccaatgacaagttc---aagaagttgtgtctttcggttgtcatattgta |
560 |
Q |
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| T |
7387504 |
aaagatatgtatattagagaatgccattgatatgtttgaccaagtcaatcaccaatgataagttcaagaagaagttgtgtctttcggttgtcatattgta |
7387405 |
T |
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| Q |
561 |
aatgtcgcgcaaaaaatcttcataagggttt |
591 |
Q |
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| T |
7387404 |
aatgtcgcgcaaaaaaatttcataagggttt |
7387374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 477 - 531
Target Start/End: Complemental strand, 9726405 - 9726352
Alignment:
| Q |
477 |
ttagagaatgcaattgatatgtttgaccaagtcaatcaccaatgacaagttcaag |
531 |
Q |
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| T |
9726405 |
ttagagaatgcaactgatatgtt-gaccaagtcagtcatcagtgacaagttcaag |
9726352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 487 - 531
Target Start/End: Complemental strand, 32492106 - 32492063
Alignment:
| Q |
487 |
caattgatatgtttgaccaagtcaatcaccaatgacaagttcaag |
531 |
Q |
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| T |
32492106 |
caattgatatgtt-gaccaagtcaatcacaaatgacaagttcaag |
32492063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 393
Target Start/End: Original strand, 32985434 - 32985493
Alignment:
| Q |
334 |
attgggtgttgagcaagttggagttcaattacattgtgatagtaagagtgtcatttattt |
393 |
Q |
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| T |
32985434 |
attgggtgttgagcaaggtggagtctggttgcattgtgatagtcagagtgtcatttattt |
32985493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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