View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_high_14 (Length: 579)
Name: NF17763_high_14
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 9 - 562
Target Start/End: Complemental strand, 50491137 - 50490585
Alignment:
| Q |
9 |
gagatgaagtgcgccgtttcatagccaggaagttcaaggatttcttactctcttacgtcaatccaaagaatgaacatggagactttgaatatgtgcgtct |
108 |
Q |
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| T |
50491137 |
gagatgaagtgcgccgtttcatagccaggaagttcaaggatttcttactctcttacgtcaatccaaagaatgaacatggagactttgaatatgtgcgtct |
50491038 |
T |
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| Q |
109 |
gattagtgaaatggtgtcaggtaatacattttctacaagatttgtagctgcaacagtcataagcatcttctttgcaccacctaatttattgtgtctttta |
208 |
Q |
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| T |
50491037 |
gataagtgaaatggtgtcaggtaatacattttctacaagatttgtagctgcaacagtcataagtatcttctttg-accacctaatttattgtgtctttta |
50490939 |
T |
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| Q |
209 |
ttgtagctaacaagtgcagtttggagatagattacaagcaatttatctatgtccatcccaacattgccatttggctggctgatgcacctcattctgtttt |
308 |
Q |
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| T |
50490938 |
ttgtagctaacaagtgcagtttggagatagattacaagcaatttatctatgtccatcccaacattgccatttggctggctgatgcacctcattctgtttt |
50490839 |
T |
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| Q |
309 |
agaagtaatggaagatgttgctaaaagtgttgtctttaacttgcatgccaattacaaacatatacatcaaaagatatatgttcgcattaccaacttaccg |
408 |
Q |
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| T |
50490838 |
agaagtaatggaagatgttgctaaaagtgttgtctttaacttgcatgccaattacaaacatatacatcaaaagatatatgttcgcattaccaacttaccg |
50490739 |
T |
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| Q |
409 |
gtttatgaccagattcgaaatatcaggtaactttaaaaaaccaactgatatattacactcctatgtcttccattggatgaaaaactaatagctgccttat |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50490738 |
gtttatgaccagattcgaaatatcaggtaactttaaaaaaccaactgatatattacactcctatgtcttccattggatgaaaaactaatagctgccttat |
50490639 |
T |
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| Q |
509 |
atcgagcaggcagatccatttgaatacaatgattcgaattgggggagttgtaac |
562 |
Q |
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| T |
50490638 |
atcgagcaggcagatccatttgaatacaatgattcgaattgggggagttgtaac |
50490585 |
T |
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