View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17763_high_147 (Length: 221)
Name: NF17763_high_147
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_147 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 45549969 - 45549783
Alignment:
| Q |
20 |
acttcgatttgttggcttacagatgaaagaaaagagattaaaccacttgaggaatctcttgagagaatgaatgtgcatgatgatgagccaaaacctacca |
119 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45549969 |
actttgatttgttggcttacagatgaaagaaaagacattaaaccacttgaggaatctcttgagagaatgaatgtgcatgatgatgagccaaaacctacca |
45549870 |
T |
|
| Q |
120 |
cagaacgaaatatccagccatctgttactgacactgaataccctcctgctgttggaagccatgatcagtttgtgccacacttctctg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45549869 |
cagaacgaaatatccagccatctgttactgacactgaataccctcctgctgttggaagccatgatcagtttgtgccacacttctctg |
45549783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 42 - 202
Target Start/End: Complemental strand, 45544253 - 45544093
Alignment:
| Q |
42 |
atgaaagaaaagagattaaaccacttgaggaatctcttgagagaatgaatgtgcatgatgatgagccaaaacctaccacagaacgaaatatccagccatc |
141 |
Q |
| |
|
|||||| |||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||| |||||||||| |
|
|
| T |
45544253 |
atgaaacaaaagacattacaccgcttgaggaatctcttgagagaatgaatgtgcatgatgatgaaccaaatcctaccactgaaacaaaaatccagccatt |
45544154 |
T |
|
| Q |
142 |
tgttactgacactgaataccctcctgctgttggaagccatgatcagtttgtgccacacttc |
202 |
Q |
| |
|
||||||||||| |||||||||| |||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
45544153 |
tgttactgacattgaatacccttctgctgctggaagccatgatcagtttgcgccacacttc |
45544093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 41 - 202
Target Start/End: Complemental strand, 45545154 - 45544996
Alignment:
| Q |
41 |
gatgaaagaaaagagattaaaccacttgaggaatctcttgagagaatgaatgtgcatgatgatgagccaaaacctaccacagaacgaaatatccagccat |
140 |
Q |
| |
|
||||||| |||||| || | |||||| |||||||||||||||||||||||||||||||| || | |||||||||||||||||| ||| |||||| ||| |
|
|
| T |
45545154 |
gatgaaataaaagacataacaccactcgaggaatctcttgagagaatgaatgtgcatgacga---gtcaaaacctaccacagaaccaaaaatccagtcat |
45545058 |
T |
|
| Q |
141 |
ctgttactgacactgaataccctcctgctgttggaagccatgatcagtttgtgccacacttc |
202 |
Q |
| |
|
|||| ||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
45545057 |
atgttgctgacactgaatacccttctgatgttaaaagccatgatcagtttgtgccacacttc |
45544996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 41 - 170
Target Start/End: Complemental strand, 45550325 - 45550199
Alignment:
| Q |
41 |
gatgaaagaaaagagattaaaccacttgaggaatctcttgagagaatgaatgtgcatgatgatgagccaaaacctaccacagaacgaaatatccagccat |
140 |
Q |
| |
|
||||||| |||||| |||| |||||| ||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||| ||| |||||| ||| |
|
|
| T |
45550325 |
gatgaaataaaagacattacaccactcgaggaatctctcgagagaatgaatgtgcatg---atgagtcaaaacctaccacagaaccaaaaatccagtcat |
45550229 |
T |
|
| Q |
141 |
ctgttactgacactgaataccctcctgctg |
170 |
Q |
| |
|
||||| |||| ||||||||||||||||| |
|
|
| T |
45550228 |
ctgttgtcgacattgaataccctcctgctg |
45550199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 63 - 206
Target Start/End: Complemental strand, 45549008 - 45548859
Alignment:
| Q |
63 |
cacttgaggaatctcttgagagaatgaatgtgcatgatgatgagccaaaacctaccacagaacgaaatatccagccatctgttactgac---actgaata |
159 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||| ||||| |||||||| |
|
|
| T |
45549008 |
cacttgaggaatctctagagagaatgaatgtgcatgatga---gccaaaacctaccacagaaccaaaaatccagccacctgttgctgacagtactgaata |
45548912 |
T |
|
| Q |
160 |
ccctcctgctgttggaagcc------atgatcagtttgtgccacacttctctg |
206 |
Q |
| |
|
||||||| || |||||||| ||||||||||||||||||| |||||| |
|
|
| T |
45548911 |
ccctccttcttctggaagccgtgatattgatcagtttgtgccacacctctctg |
45548859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University