View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_high_158 (Length: 202)
Name: NF17763_high_158
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_158 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 1e-64; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 41469524 - 41469652
Alignment:
| Q |
22 |
aaagtaaattgttatatatataattgatattggtattccgtttcattgatttagaggcgaaacattctggtttttattattatatatatccttttggtgt |
121 |
Q |
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| T |
41469524 |
aaagtaaattgttatatatataattgatattggtattccgtttcattgatttagaggcgaaacattctggtttttattattatatatatcctttcggtgt |
41469623 |
T |
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| Q |
122 |
agcttacattctgttgcattttttaatga |
150 |
Q |
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| T |
41469624 |
agcttacattctgttgcattttttaatga |
41469652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 42 - 143
Target Start/End: Original strand, 41483622 - 41483723
Alignment:
| Q |
42 |
taattgatattggtattccgtttcattgatttagaggcgaaacattctggtttttattattatatatatccttttggtgtagcttacattctgttgcatt |
141 |
Q |
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| T |
41483622 |
taattaatattggtgttctgtttctttgatttagaggtgaaacattctggtttttactactatatatatcattttggtgtagcttacagtctgttacatt |
41483721 |
T |
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| Q |
142 |
tt |
143 |
Q |
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|| |
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| T |
41483722 |
tt |
41483723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 143
Target Start/End: Original strand, 41476568 - 41476670
Alignment:
| Q |
42 |
taattgatattggtattccgtttcattgatttagaggcgaaacattctggtttttattattatatatatccttttggtgtagctt-acattctgttgcat |
140 |
Q |
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| T |
41476568 |
taattaatattggtattctgtttcatggatttagagccaaaacattctggtttttattaatatatctttcttctcggtatagcttaacattctgctgcat |
41476667 |
T |
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| Q |
141 |
ttt |
143 |
Q |
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||| |
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| T |
41476668 |
ttt |
41476670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 143
Target Start/End: Original strand, 40750828 - 40750929
Alignment:
| Q |
42 |
taattgatattggtattccgtttcattgatttagaggcgaaacattctggtttttattattatatatatccttttggtgtagcttacattctgttgcatt |
141 |
Q |
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||||| |||| |||||||||| |||| |||||||||| |||||| | | ||||||| || || | |||| ||||||||||||||||||||| ||||||| |
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| T |
40750828 |
taattaatatcggtattccgtctcatcgatttagaggtgaaacactatcgtttttactactacacctatcattttggtgtagcttacattctattgcatt |
40750927 |
T |
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| Q |
142 |
tt |
143 |
Q |
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|| |
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| T |
40750928 |
tt |
40750929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 16409183 - 16409115
Alignment:
| Q |
48 |
atattggtattccgtttcattgatttagaggcgaaacattctggtttttattattatatatatcctttt |
116 |
Q |
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||||| |||||| ||||| |||||||||||| |||||||||| ||||||||| |||||| ||||||||| |
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| T |
16409183 |
atatttgtattctgtttctttgatttagaggtgaaacattcttgtttttattgttatatgtatcctttt |
16409115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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