View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17763_high_159 (Length: 201)
Name: NF17763_high_159
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_159 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 161; Significance: 4e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 29037579 - 29037743
Alignment:
| Q |
20 |
gacaccaccacctatttttagttattgtggaaagaatgaagctcttgacattgtctttcctgattggtcctattggggttggtaagtctcctatattaaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29037579 |
gacaccaccacctatttttagttattgtggaaagaatgaagctcttgacattgtctttcctgattggtcctattggggttggtaagtctcctatattaaa |
29037678 |
T |
|
| Q |
120 |
ttactacttattaatgtggatttttggaatgttaataagtttaacaaggtggtatacacgatttt |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29037679 |
ttactacttattaatgtggatttttggaatgttaataagtttaacaaggtgctatacacgatttt |
29037743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 29017715 - 29017803
Alignment:
| Q |
20 |
gacaccaccacctatttttagttattgtggaaagaatgaagctcttgacattgtctttcctgattggtcctattggggttggtaagtct |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||| | ||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29017715 |
gacactaccacctatttttagttattgtggacaaaatgatgctcttgatattgtctttcctgattggtccttttggggttggtaagtct |
29017803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University