View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_high_19 (Length: 556)
Name: NF17763_high_19
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 380
Target Start/End: Complemental strand, 48231134 - 48230765
Alignment:
| Q |
11 |
cacagactgtagagccgaaccatttctgtcaactgatttaccctgctgaacaactgatgcttgaacacgtcttctcgagtctctagcagatgctggctgt |
110 |
Q |
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| T |
48231134 |
cacagactgtagagccgaaccatttctgtcaactgatttaccctgctgaacaactgatgcttgaacacgtcttctcgagtctctagcagatgctggctgt |
48231035 |
T |
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| Q |
111 |
attgcggaacaaagtaagaaccagcaattgaaattcgaaatatatatataaaaatgtcatcaaacattagtatacaaaatgcttcaaacataatcctgac |
210 |
Q |
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| T |
48231034 |
attgcggaacaaagtaagaaccagcaattgaaattcgaaatatatatataaaaatgtcatcaaacattagtatacaaaatgcttcaaacataatcctgac |
48230935 |
T |
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| Q |
211 |
tctaggaattagtgtttgaattggaagtctttcagttatcaataaaggaagaacacaattttatggacattggatatggatactatgtcacctctcttcg |
310 |
Q |
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| T |
48230934 |
tctaggaattagtgtttgaattgaaagtctttcagttatcaataaaggaagaacacaattttatggacattggatatggatactatgtcacctctcttcg |
48230835 |
T |
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| Q |
311 |
taaagagctcattatcataattcaatgttatttcattctttggcatcaacattaggtaatagttgattag |
380 |
Q |
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| T |
48230834 |
taaagagctcattatcataattcaatgttatttcattctttggcatcaacattaggtaatagttgattag |
48230765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 445 - 540
Target Start/End: Complemental strand, 48230700 - 48230605
Alignment:
| Q |
445 |
gagcagatcaacttcataatgacaattcctaatgtaaaccatgaaattataatgttattcatacaattctacatcaccctcttaattgatatatac |
540 |
Q |
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| T |
48230700 |
gagcagatcaacttcataatgataattcctaatgtaaaccatgaaagtataatgttattcatacaattctacatcaccctcttaattgatatatac |
48230605 |
T |
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