View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17763_high_20 (Length: 553)

Name: NF17763_high_20
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17763_high_20
NF17763_high_20
[»] chr1 (5 HSPs)
chr1 (282-542)||(14889203-14889461)
chr1 (16-220)||(14889519-14889724)
chr1 (17-220)||(14883868-14884072)
chr1 (282-404)||(14883688-14883810)
chr1 (437-532)||(14883588-14883685)
[»] chr7 (20 HSPs)
chr7 (17-126)||(27249367-27249476)
chr7 (282-520)||(27243611-27243861)
chr7 (23-130)||(27281987-27282094)
chr7 (19-126)||(27296451-27296558)
chr7 (282-533)||(27249555-27249811)
chr7 (29-126)||(27243407-27243504)
chr7 (16-118)||(27304677-27304783)
chr7 (282-421)||(27282189-27282327)
chr7 (282-421)||(27272119-27272256)
chr7 (282-397)||(27296622-27296736)
chr7 (47-130)||(27271900-27271983)
chr7 (459-525)||(27323492-27323564)
chr7 (17-99)||(27220519-27220601)
chr7 (65-116)||(27301875-27301926)
chr7 (60-129)||(27147477-27147547)
chr7 (499-533)||(27314231-27314265)
chr7 (305-342)||(27158684-27158721)
chr7 (282-339)||(27302042-27302099)
chr7 (460-492)||(27236731-27236763)
chr7 (492-532)||(27302232-27302272)


Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 282 - 542
Target Start/End: Complemental strand, 14889461 - 14889203
Alignment:
Q  282 ctaatatcaatttcattttactaattgcagggtaaactagtactgagcagcttgcagggttgaaggttaatgaataaagtaataattagtttttggtaat 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||    
T  14889461 ctaatatcaatttcattttactaattgcagggtaaactagtactgagcagcttgcagggttgaagcttaatgaataaagtaataattggttttcggtaat 14889362  T
Q  382 aaccaataccgacagaataaagaggatgactttactcttatnnnnnnnnnnngatgcttaatttctctggttgtaacttgtaactgaatccccactaggg 481  Q
    |||||||| ||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14889361 aaccaatatcgacagaataaagaggatgactttactcttat--aaaaaaaaagatgcttaatttctctggttgtaacttgtaactgaatccccactaggg 14889264  T
Q  482 atcactatatataattaaaataaaatctgaaatgtttcagatcaaaatattccatgtttca 542  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14889263 atcactatatataattaaaataaaatctgaaatgtttcagatcaaaatattccatgtttca 14889203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 14889724 - 14889519
Alignment:
Q  16 gttgcttccctccctaaagactgtggtgttgacattggctatgtgattagccctgacatggactgcagcaagtatatctctcaccatcaaccctcttttt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14889724 gttgcttccctccctaaagactgtggtgttgacattggctatgtgattagccctgacatggactgcagcaagtatatctctcaccatcaaccctcttttt 14889625  T
Q  116 ctatttcatatatactcctttattagggtttagggtttacataaaatttatataatctgctgcgttgttacacatttacaatatgtt-gggactagaata 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  14889624 ctatttcatatatactcctttattagggtttagggtttacataaaatttatataatctgctgtgttgttacacatttacaatatgttagggactagaata 14889525  T
Q  215 catgtg 220  Q
    ||||||    
T  14889524 catgtg 14889519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 14884072 - 14883868
Alignment:
Q  17 ttgcttccctccctaaagactgtggtgttgacattggctatgtgattagccctgacatggactgcagcaagtatatctctcaccatcaaccctctttttc 116  Q
    |||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14884072 ttgcttccctccctaaagactgtggtatggacatgggctatgtgattagccctgacatggactgcagcaagtatatctctcaccatcaaccctctttttc 14883973  T
Q  117 tatttcatatatactcctttattagggtttagggtttacataaaatttatataatctgctgcgttgttacacatttacaatatgtt-gggactagaatac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  14883972 tatttcatatatactcctttattagggtttagggtttacataaaatttatataatctgctgtgttgttacacatttacaatatgttagggactagaatac 14883873  T
Q  216 atgtg 220  Q
    |||||    
T  14883872 atgtg 14883868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 282 - 404
Target Start/End: Complemental strand, 14883810 - 14883688
Alignment:
Q  282 ctaatatcaatttcattttactaattgcagggtaaactagtactgagcagcttgcagggttgaaggttaatgaataaagtaataattagtttttggtaat 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14883810 ctaatatcaatttcattttactaattgcagggtaaactagtactgagcagcttgcagggttgaaggttaatgaataaagtaataattggtttttggtaat 14883711  T
Q  382 aaccaataccgacagaataaaga 404  Q
    |||||||||||||||||||||||    
T  14883710 aaccaataccgacagaataaaga 14883688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 437 - 532
Target Start/End: Complemental strand, 14883685 - 14883588
Alignment:
Q  437 gcttaatttctctggttgtaacttgtaactgaatccccactagggatcactata--tataattaaaataaaatctgaaatgtttcagatcaaaatatt 532  Q
    |||||||||||   ||||||| ||||||||||||||||||||||||||||||||  |||||| |||||||||| ||||||||||||||||||||||||    
T  14883685 gcttaatttcttcagttgtaagttgtaactgaatccccactagggatcactatatatataataaaaataaaatttgaaatgtttcagatcaaaatatt 14883588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 27249367 - 27249476
Alignment:
Q  17 ttgcttccctccctaaagactgtggtgttgacattggctatgtgattagccctgacatggactgcagcaagtatatctctcaccatcaaccctctttttc 116  Q
    |||||||||||||||||||||||||||||||||| |||||| | ||||||||| |||||||||||| |||||| |||||||||||||||||||| |||||    
T  27249367 ttgcttccctccctaaagactgtggtgttgacataggctatattattagccctaacatggactgcaacaagtacatctctcaccatcaaccctccttttc 27249466  T
Q  117 tatttcatat 126  Q
    ||||||||||    
T  27249467 tatttcatat 27249476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 282 - 520
Target Start/End: Original strand, 27243611 - 27243861
Alignment:
Q  282 ctaatatcaatttcattttactaattgcagggtaaactagtactgagcagcttgcagggttgaaggt-------taatgaataaagtaataattagtttt 374  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||  |||       |||| ||||||||||||||| ||||     
T  27243611 ctaatatcaatttcactttactaattgcagggtaaattagtactgagcagcttgcggggttggcggttaataaataattaataaagtaataattggttta 27243710  T
Q  375 tggtaataaccaataccgacagaataaagaggatgactttactcttatnnnnnnnnnnngatgcttaatttctctggttgtaacttgtaactgaatcccc 474  Q
    |||||||||||||||||| |||| ||||| ||| || ||||||||||               ||||||| |||| |||| ||| ||||||||||||||||    
T  27243711 tggtaataaccaataccggcagagtaaaggggaagattttactcttaaaaaaacaaagtttggcttaatctctccggttataagttgtaactgaatcccc 27243810  T
Q  475 actagggatcactatatataat-----taaaataaaatctgaaatgtttca 520  Q
    |||||||||||| |||||||||     | ||||||||||||||||||||||    
T  27243811 actagggatcacaatatataattttccttaaataaaatctgaaatgtttca 27243861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 23 - 130
Target Start/End: Original strand, 27281987 - 27282094
Alignment:
Q  23 ccctccctaaagactgtggtgttgacattggctatgtgattagccctgacatggactgcagcaagtatatctctcaccatcaaccctctttttctatttc 122  Q
    |||||||||||| |||||||| | |||| ||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27281987 ccctccctaaagtctgtggtgctaacataggctatgagattagccctggcatggactgcagcaagtacatctctcaccatcaaccctctttttctatttc 27282086  T
Q  123 atatatac 130  Q
    ||||||||    
T  27282087 atatatac 27282094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 27296451 - 27296558
Alignment:
Q  19 gcttccctccctaaagactgtggtgttgacattggctatgtgattagccctgacatggactgcagcaagtatatctctcaccatcaaccctctttttcta 118  Q
    |||||||||||||||| |||||||| | |||| ||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  27296451 gcttccctccctaaagtctgtggtgctaacataggctatgagattagccctgacatggactgcagcaagtacgtctctcaccatcaaccctatttttcta 27296550  T
Q  119 tttcatat 126  Q
    ||||||||    
T  27296551 tttcatat 27296558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 282 - 533
Target Start/End: Original strand, 27249555 - 27249811
Alignment:
Q  282 ctaatatcaatttcattttactaattgcagggtaaactagtactgagcagcttgcagggttgaaggttaatgaataaagtaataattagtttttggtaat 381  Q
    ||||||||||||||| ||||||||||||||||||||||||||  |||||||||| ||||||   | ||||||||| ||| |||| || |||| |||||||    
T  27249555 ctaatatcaatttcactttactaattgcagggtaaactagtatcgagcagcttgaagggttagtgcttaatgaat-aaggaatacttggtttgtggtaat 27249653  T
Q  382 aaccaataccgacagaataaagaggatgactttactctt------atnnnnnnnnnnngat-gcttaatttctctggttgtaacttgtaactgaatcccc 474  Q
    ||||||||| |||||||||||| ||||||||||||||||      |            ||| |||||||||||  |||||||| ||||||||||||||||    
T  27249654 aaccaatacagacagaataaag-ggatgactttactcttacaaaaaaaaaaaaaaaaggatagcttaatttctacggttgtaagttgtaactgaatcccc 27249752  T
Q  475 actagggatcactatatataattaaaataaaatctgaaatgtttcagatcaaaatattc 533  Q
    |||| |||||||| | |||||||||| | ||| || |||| ||||||||| ||||||||    
T  27249753 actatggatcactgtgtataattaaatttaaaccttaaatttttcagatcgaaatattc 27249811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 27243407 - 27243504
Alignment:
Q  29 ctaaagactgtggtgttgacattggctatgtgattagccctgacatggactgcagcaagtatatctctcaccatcaaccctctttttctatttcatat 126  Q
    |||||||||||||||||||| | ||||||| |||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||    
T  27243407 ctaaagactgtggtgttgacttgggctatgagattagccctgatatggattgcagcaagtacatctctcaccatcaaccctccttttctatttcatat 27243504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 27304677 - 27304783
Alignment:
Q  16 gttgcttccctccctaaagactgtggtgttgacattggctatgtgattagccctgacatggactgcagcaagtat----atctctcaccatcaaccctct 111  Q
    |||||| ||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||    
T  27304677 gttgctaccctccctaaagagtgtggtgttgacttgggctatgtgattagccctgacatggactgcagcaagtacgtacatctctcaccatcaaccctct 27304776  T
Q  112 ttttcta 118  Q
    |||||||    
T  27304777 ttttcta 27304783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 282 - 421
Target Start/End: Original strand, 27282189 - 27282327
Alignment:
Q  282 ctaatatcaatttcattttactaattgcagggtaaactagtactgagcagcttgcagggttgaaggttaatgaataaagtaataattagtttttggtaat 381  Q
    ||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| |||||||  | ||| | ||| |||||||| || |||| || ||||    
T  27282189 ctaatatcaatttcactttactaattgcaggataaactagtattgagcagcttgaagggttggtgcttattcaat-aagtaatacttggtttgtgctaat 27282287  T
Q  382 aaccaataccgacagaataaagaggatgactttactctta 421  Q
    ||||||||| ||||||||||||  |||||  |||||||||    
T  27282288 aaccaatacagacagaataaaggagatgatgttactctta 27282327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 421
Target Start/End: Original strand, 27272119 - 27272256
Alignment:
Q  282 ctaatatcaatttcattttactaattgcagggtaaactagtactgagcagcttgcagggttgaaggttaatgaataaagtaataattagtttttggtaat 381  Q
    ||||||||||||||| | ||||||||||||||||  |||||| ||||||||||| |||||||  | ||||||||| |||||||| || |||| ||||||     
T  27272119 ctaatatcaatttcactatactaattgcagggtaccctagtattgagcagcttgaagggttggtgcttaatgaat-aagtaatacttggtttgtggtaa- 27272216  T
Q  382 aaccaataccgacagaataaagaggatgactttactctta 421  Q
    ||||||||  ||||||||||||  |||||  |||||||||    
T  27272217 aaccaatatagacagaataaaggagatgaagttactctta 27272256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 397
Target Start/End: Original strand, 27296622 - 27296736
Alignment:
Q  282 ctaatatcaatttcattttactaattgcagggtaaactagtactgagcagcttgcagggttgaaggttaatgaataaagtaataattagtttttggtaat 381  Q
    ||||||||||||||| ||||||||||||||| |||||||||| ||||| ||||| |||||||  | ||| ||||| |||||||| || |||| || ||||    
T  27296622 ctaatatcaatttcactttactaattgcaggataaactagtattgagctgcttgaagggttggtgcttagtgaat-aagtaatacttggtttgtgctaat 27296720  T
Q  382 aaccaataccgacaga 397  Q
    ||||||||| ||||||    
T  27296721 aaccaatacagacaga 27296736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 47 - 130
Target Start/End: Original strand, 27271900 - 27271983
Alignment:
Q  47 acattggctatgtgattagccctgacatggactgcagcaagtatatctctcaccatcaaccctctttttctatttcatatatac 130  Q
    |||| |||||| | ||| ||||| |||||||||||| |  ||| ||||||||||||||||||||||||||||||||||||||||    
T  27271900 acataggctatattattcgccctaacatggactgcaactcgtacatctctcaccatcaaccctctttttctatttcatatatac 27271983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 459 - 525
Target Start/End: Original strand, 27323492 - 27323564
Alignment:
Q  459 ttgtaactgaatccccactagggatcactata-------tataattaaaataaaatctgaaatgtttcagatca 525  Q
    ||||||||||||||| ||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  27323492 ttgtaactgaatccc-actagggatcactatactattcatataattaaaataaaatctgaaatgtttcagatca 27323564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 27220519 - 27220601
Alignment:
Q  17 ttgcttccctccctaaagactgtggtgttgacattggctatgtgattagccctgacatggactgcagcaagtatatctctcac 99  Q
    |||||||| || |||||||||| ||||||||||| |||||| | ||||| ||| ||| |||||| |||||||| |||||||||    
T  27220519 ttgcttccgtcgctaaagactgcggtgttgacataggctatattattagtcctaacacggactgtagcaagtaaatctctcac 27220601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 27301875 - 27301926
Alignment:
Q  65 gccctgacatggactgcagcaagtatatctctcaccatcaaccctctttttc 116  Q
    |||||||||||||||||  |||||| ||||||||||| ||||||| ||||||    
T  27301875 gccctgacatggactgcgacaagtacatctctcaccaccaaccctttttttc 27301926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 27147477 - 27147547
Alignment:
Q  60 gattagccctgacatggactgcagcaagtatatctctcaccatcaaccctc-tttttctatttcatatata 129  Q
    ||||| |||||| ||||||||   |||||||||||||||| |||| ||||| |||||| ||||||||||||    
T  27147477 gattacccctgatatggactgtgacaagtatatctctcactatcatccctcttttttcaatttcatatata 27147547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 499 - 533
Target Start/End: Original strand, 27314231 - 27314265
Alignment:
Q  499 aaataaaatctgaaatgtttcagatcaaaatattc 533  Q
    ||||||||||||||||||||||| |||||||||||    
T  27314231 aaataaaatctgaaatgtttcaggtcaaaatattc 27314265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 342
Target Start/End: Original strand, 27158684 - 27158721
Alignment:
Q  305 attgcagggtaaactagtactgagcagcttgcagggtt 342  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  27158684 attgcagggtaaattagtattgagcagcttgcagggtt 27158721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 339
Target Start/End: Original strand, 27302042 - 27302099
Alignment:
Q  282 ctaatatcaatttcattttactaattgcagggtaaactagtactgagcagcttgcagg 339  Q
    ||||| ||||||||  |||||| ||||||||||||||||| |  ||||||||||||||    
T  27302042 ctaatgtcaatttcgctttactcattgcagggtaaactagaatcgagcagcttgcagg 27302099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 27236731 - 27236763
Alignment:
Q  460 tgtaactgaatccccactagggatcactatata 492  Q
    |||||||| ||||||||||||||||||||||||    
T  27236731 tgtaactggatccccactagggatcactatata 27236763  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 532
Target Start/End: Original strand, 27302232 - 27302272
Alignment:
Q  492 ataattaaaataaaatctgaaatgtttcagatcaaaatatt 532  Q
    ||||||||||||||||||||||| |||||  ||||||||||    
T  27302232 ataattaaaataaaatctgaaatatttcatttcaaaatatt 27302272  T

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