View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_high_22 (Length: 550)
Name: NF17763_high_22
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 5 - 535
Target Start/End: Complemental strand, 33234502 - 33233970
Alignment:
| Q |
5 |
gagtgagaagaagtaatgtattgaatgaaaaaatgagtgttgagtaataatatataaacaagagaactcatatacattatagatttactaaaatgacaaa |
104 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||| |
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| T |
33234502 |
gagttagaagaagtaatgtattgaatgaaaaaatgagtgttgagtaataatatataaacgagagaactcgtatacacgatagatttactaaaatgacaaa |
33234403 |
T |
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| Q |
105 |
cctactctaatatcaaacatgcacttagctcaatataatgatcctcttgtaatttaagctcaatataatggtgcagagttggtaagccataaatatatta |
204 |
Q |
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| T |
33234402 |
cctactctaatatcaaacatgcacttagctcaatataatgatcctcgtgtaatttaagctcaatataatggtgcagagttggtaagccataaatatatta |
33234303 |
T |
|
| Q |
205 |
tatgtatcattagtcaaaacaaaatgcggatttgcctccataattaaggattcaattcaattgtatgcattagaattactactttggag--nnnnnnnga |
302 |
Q |
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| T |
33234302 |
tatgtatcattagtcaaaacaaaatgcggatttgcctccataattaaggattcaattcaattgtatgcattagaattactactttggagaaaaaaaaaga |
33234203 |
T |
|
| Q |
303 |
gtttaatgcttcaagtacacgaaatttacatcatgataaccaaaagttatgaaaaaatccacctaattttttgtaacaatatgcatgaataattgataat |
402 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33234202 |
gtttaatgcttcaagtacacgagatttacatcatgataaccaaaagttatgaaaaaatccacctaattttttgtaacaatatgcatgaataattgataat |
33234103 |
T |
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| Q |
403 |
ctatagtcttggatggcatctggatttgacaagttgcagaaaggtgtggctgatacttgctgatggttacatcaatggtagatttgcaagccaaatggca |
502 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33234102 |
ctatagccttggatggcatctggatttgacaagttgcagaaaggtgtggctgatacttgctgatggttacatcaatggtagatttgcaagccaaatggca |
33234003 |
T |
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| Q |
503 |
gcatgaagttcataatttgtccagtagcaattg |
535 |
Q |
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| T |
33234002 |
gcatgaagttcataatttgtccagtagcaattg |
33233970 |
T |
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Back To:
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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 508
Target Start/End: Original strand, 10539237 - 10539268
Alignment:
| Q |
477 |
atggtagatttgcaagccaaatggcagcatga |
508 |
Q |
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| T |
10539237 |
atggtagatttgcaagccaaatggcagcatga |
10539268 |
T |
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