View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17763_high_24 (Length: 532)

Name: NF17763_high_24
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17763_high_24
NF17763_high_24
[»] chr3 (19 HSPs)
chr3 (11-515)||(6246186-6246685)
chr3 (224-515)||(6169787-6170078)
chr3 (288-515)||(6143197-6143424)
chr3 (288-513)||(6238547-6238772)
chr3 (344-515)||(6266569-6266740)
chr3 (316-503)||(13269544-13269731)
chr3 (168-286)||(13269369-13269490)
chr3 (343-497)||(6260068-6260222)
chr3 (139-217)||(6238820-6238898)
chr3 (318-494)||(6900978-6901151)
chr3 (311-515)||(7750979-7751180)
chr3 (429-515)||(8472444-8472530)
chr3 (31-102)||(6238900-6238971)
chr3 (370-481)||(6590356-6590467)
chr3 (309-402)||(6883516-6883609)
chr3 (436-515)||(6918000-6918079)
chr3 (432-514)||(6837946-6838028)
chr3 (427-488)||(6849840-6849901)
chr3 (33-113)||(13268390-13268470)
[»] chr1 (1 HSPs)
chr1 (31-268)||(35139552-35139789)
[»] chr7 (1 HSPs)
chr7 (430-513)||(6572356-6572439)
[»] scaffold0425 (1 HSPs)
scaffold0425 (427-488)||(12948-13009)


Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 11 - 515
Target Start/End: Complemental strand, 6246685 - 6246186
Alignment:
Q  11 aaacataggcatatgatagactaacaacttctagcctaggctagtttattcccactctttgtgttatttggcataagtttatcattttaaaatgcagtga 110  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6246685 aaacataagcatatgatagactaacaacttctagcctaggctagtttattcccactctttgtgttatttggcataagtttatcattttaaaatgcagtga 6246586  T
Q  111 ataacaaaatattcaccccttnnnnnnngaatatatgcttgaaaaaagtgaatagagttgaggtggttggtattgtaacaataaacaaatgaatgaataa 210  Q
    |||||||||||||||||||||       ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6246585 ataacaaaatattcaccccttaaaaaaagaatatatggttgaaacaagtgaatagagttgaggtggttggtattgtaacaataaacaaatgaatgaatga 6246486  T
Q  211 ataaataaacatgatggtaatatggtaggtgtagggaatcgttgaccaaactgatctt---gcatatagtctgcatccctgatcattttggttttgttga 307  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||   ||||||||        |||||||||||||||||||||||    
T  6246485 ataaataaacatgatggtaatatggtaggtgtggggattcgttgaccaaactgatcttcttgcatatag--------cctgatcattttggttttgttga 6246394  T
Q  308 attaattgatatcatggcagaggttgttgttcgtcgggcatttctttcccccgtcattcaattgatttgtgagagattagcttcaacagatttcagtgac 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6246393 attaattgatatcatggcagaggttgttgttcgtcgggcatttctttcccccgtcattcaattgatttgtgagagattagcttcaacagatttcagtgac 6246294  T
Q  408 tacttccatgaaaagcttgtgaaaaaacttgaaatcacattggtttctatcaatcaagtgctggatgacgcagagacaaagaagtacgagaatcaaaacg 507  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6246293 tacctccatgaaaagcttgtgaaaaaacttgaaatcacattggtttctatcaatcaagtgctggatgacgcagagacaaagaagtacgagaatcaaaacg 6246194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 224 - 515
Target Start/End: Complemental strand, 6170078 - 6169787
Alignment:
Q  224 atggtaatatggtaggtgtagggaatcgttgaccaaactgatcttgcatatagtctgcatccctgatcattttggttttgttgaattaattgatatcatg 323  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6170078 atggtaatatggtaggtgtggggattcgttgaccaaactgatcttgcatatagtctgcatccctgatcattttggttttgttgaattaattgatatcatg 6169979  T
Q  324 gcagaggttgttgttcgtcgggcatttctttcccccgtcattcaattgatttgtgagagattagcttcaacagatttcagtgactacttccatgaaaagc 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6169978 gcagaggttgttgttcgtcgggcatttctttcccccgtcattcaattgatttgtgagagattagcttcaacagatttgagtgactacttccatgaaaagc 6169879  T
Q  424 ttgtgaaaaaacttgaaatcacattggtttctatcaatcaagtgctggatgacgcagagacaaagaagtacgagaatcaaaacgtgaagaat 515  Q
     |||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| ||||||| |||| | |||| ||||||    
T  6169878 atgtgaaaaaacttgaaatcacattggtttcaatcaataaagtgcttgatgacgcagagacaaagcagtacgaaaatctagacgtaaagaat 6169787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 288 - 515
Target Start/End: Complemental strand, 6143424 - 6143197
Alignment:
Q  288 gatcattttggttttgttgaattaattgatatcatggcagaggttgttgttcgtcgggcatttctttcccccgtcattcaattgatttgtgagagattag 387  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||| || |||||||||||||||| ||||||||||||||||||||||  |||     
T  6143424 gatcattttggttttgttcaattaattgatatcatggcagaggttgatgttggtagggcatttctttcccctgtcattcaattgatttgtgagaagttaa 6143325  T
Q  388 cttcaacagatttcagtgactacttccatgaaaagcttgtgaaaaaacttgaaatcacattggtttctatcaatcaagtgctggatgacgcagagacaaa 487  Q
    |||||||||||||||| ||||| |||||||||  ||| ||||||||||||||||||||| |    ||||||||| | |||||||||||| ||||||||||    
T  6143324 cttcaacagatttcagagactatttccatgaagggctggtgaaaaaacttgaaatcacactcaagtctatcaattatgtgctggatgacacagagacaaa 6143225  T
Q  488 gaagtacgagaatcaaaacgtgaagaat 515  Q
    | ||||| | ||||||| ||||||||||    
T  6143224 gcagtaccaaaatcaaaccgtgaagaat 6143197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 288 - 513
Target Start/End: Complemental strand, 6238772 - 6238547
Alignment:
Q  288 gatcattttggttttgttgaattaattgatatcatggcagaggttgttgttcgtcgggcatttctttcccccgtcattcaattgatttgtgagagattag 387  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||  ||||||||||||||| |||||| ||||    
T  6238772 gatcattttgtttttgttcaattaattgatatcatggcagaggttgttgttggtcaggcatttctttcccctatcattcaattgatttatgagaggttag 6238673  T
Q  388 cttcaacagatttcagtgactacttccatgaaaagcttgtgaaaaaacttgaaatcacattggtttctatcaatcaagtgctggatgacgcagagacaaa 487  Q
    |||||||||||||||| ||||||||  ||||   ||| ||||||||||||||||||||| ||   ||||||||| ||||||||||||||| ||||||| |    
T  6238672 cttcaacagatttcagagactacttgaatgatgggctagtgaaaaaacttgaaatcacactgaagtctatcaataaagtgctggatgacgaagagacaga 6238573  T
Q  488 gaagtacgagaatcaaaacgtgaaga 513  Q
    | |||||||||| | | |||||||||    
T  6238572 gtagtacgagaaactagacgtgaaga 6238547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 344 - 515
Target Start/End: Complemental strand, 6266740 - 6266569
Alignment:
Q  344 ggcatttctttcccccgtcattcaattgatttgtgagagattagcttcaacagatttcagtgactacttccatgaaaagcttgtgaaaaaacttgaaatc 443  Q
    |||||||||||||||  |||| |||  |||||||||||| ||| |||||||||||||| | | |||| ||| |||| |||| | ||||||||||||||||    
T  6266740 ggcatttctttcccctatcatccaagagatttgtgagaggttatcttcaacagatttcggaggctacgtccgtgaagagctggggaaaaaacttgaaatc 6266641  T
Q  444 acattggtttctatcaatcaagtgctggatgacgcagagacaaagaagtacgagaatcaaaacgtgaagaat 515  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6266640 acactggtttctatcaatcaagtgctggatgacgcagagacaaagaagtacgagaatcaaaacgtgaagaat 6266569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 316 - 503
Target Start/End: Original strand, 13269544 - 13269731
Alignment:
Q  316 atatcatggcagaggttgttgttcgtcgggcatttctttcccccgtcattcaattgatttgtgagagattagcttcaacagatttcagtgactacttcca 415  Q
    |||||||||||||||||| |||| ||| |||||||||||||||  ||||||||||||||||||||| |||| |||||||| ||||||| ||||| |||||    
T  13269544 atatcatggcagaggttgatgttggtcaggcatttctttcccctatcattcaattgatttgtgagaaattaacttcaacatatttcagagactatttcca 13269643  T
Q  416 tgaaaagcttgtgaaaaaacttgaaatcacattggtttctatcaatcaagtgctggatgacgcagagacaaagaagtacgagaatcaa 503  Q
    ||||  ||| ||||||||||||||||||||| ||   ||||||||| |  ||||||||||||||||||| ||| ||||| | ||||||    
T  13269644 tgaagggctggtgaaaaaacttgaaatcacactgaagtctatcaattatttgctggatgacgcagagactaagcagtaccaaaatcaa 13269731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 168 - 286
Target Start/End: Original strand, 13269369 - 13269490
Alignment:
Q  168 ttgaggtggttggtattgtaacaataaacaaatgaatgaataaataaataaacatgatggtaatatggtaggtgtagggaatcgttgaccaaactga--- 264  Q
    |||||||||||||||| |||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||| |||| ||||||||||||||||       
T  13269369 ttgaggtggttggtatcgtaacaataaacaaatcaatgaataaacaaacaaacatgatggtaatatggtaggtgtggggattcgttgaccaaactgatct 13269468  T
Q  265 tcttgcatatagtctgcatccc 286  Q
    |||||||||||| |||||||||    
T  13269469 tcttgcatatagcctgcatccc 13269490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 343 - 497
Target Start/End: Complemental strand, 6260222 - 6260068
Alignment:
Q  343 gggcatttctttcccccgtcattcaattgatttgtgagagattagcttcaacagatttcagtgactacttccatgaaaagcttgtgaaaaaacttgaaat 442  Q
    |||||||||||||||| || |||| |||||||||| |||| |||||||||||||||||||| ||||||||| |  ||  ||||||||| ||||||||||     
T  6260222 gggcatttctttcccctgtgattcgattgatttgtaagagtttagcttcaacagatttcagagactacttcgacaaagggcttgtgaataaacttgaaac 6260123  T
Q  443 cacattggtttctatcaatcaagtgctggatgacgcagagacaaagaagtacgag 497  Q
    |||| ||  || |||||||| ||| || |||||||||||||||||| ||||||||    
T  6260122 cacactgaattttatcaatctagtactagatgacgcagagacaaagcagtacgag 6260068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 6238898 - 6238820
Alignment:
Q  139 gaatatatgcttgaaaaaagtgaatagagttgaggtggttggtattgtaacaataaacaaatgaatgaataaataaata 217  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6238898 gaatatatggttgaaacaagtgaatagagttgaggtggttggtattgtaacaataaacaaatcaatgaataaataaata 6238820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 318 - 494
Target Start/End: Complemental strand, 6901151 - 6900978
Alignment:
Q  318 atcatggcagaggttgttgttcgtcgggcatttctttcccccgtcattcaattgatttgtgagagattagcttcaacagatttcagtgactacttccatg 417  Q
    |||||| ||||||||||||   || || ||||||||||  | ||| ||| | |||||| |||||| |||||||||||||||| ||| || ||| ||||||    
T  6901151 atcatgtcagaggttgttg---gtgggacatttctttcgtctgtctttcgagtgatttttgagaggttagcttcaacagattgcagagattacgtccatg 6901055  T
Q  418 aaaagcttgtgaaaaaacttgaaatcacattggtttctatcaatcaagtgctggatgacgcagagacaaagaagtac 494  Q
     | |  | | ||||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||| |||||    
T  6901054 tagatgtggagaaaaaacttgaaatcacactggtttctatcaataaagtgctggatgacgcaaaggcaaagcagtac 6900978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 311 - 515
Target Start/End: Complemental strand, 7751180 - 7750979
Alignment:
Q  311 aattgatatcatggcagaggttgttgttcgtcgggcatttctttcccccgtcattcaattgatttgtgagagattagcttcaacagatttcagtgactac 410  Q
    |||||| |||||||||| ||||||||   || |||||||||||||  | ||| ||||| ||||| | ||||| || |||||   ||||||||| ||||||    
T  7751180 aattgagatcatggcaggggttgttg---gtggggcatttctttcgtctgtctttcaagtgattcgagagaggttggcttctcaagatttcagagactac 7751084  T
Q  411 ttccatgaaaagcttgtgaaaaaacttgaaatcacattggtttctatcaatcaagtgctggatgacgcagagacaaagaagtacgagaatcaaaacgtga 510  Q
    |||||||||| |||   ||||||||||||||||||| | | |||||||||| |||| |||||||| ||||| | |||| ||||| |  | | ||||||||    
T  7751083 ttccatgaaaggctgtggaaaaaacttgaaatcacactagattctatcaatgaagtactggatgatgcagatataaaggagtaccaacaccgaaacgtga 7750984  T
Q  511 agaat 515  Q
    |||||    
T  7750983 agaat 7750979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 429 - 515
Target Start/End: Complemental strand, 8472530 - 8472444
Alignment:
Q  429 aaaaaacttgaaatcacattggtttctatcaatcaagtgctggatgacgcagagacaaagaagtacgagaatcaaaacgtgaagaat 515  Q
    |||||||| ||||||||||||  ||||||||||||| || ||||||| |||||||||||||||||| |||| ||||| || ||||||    
T  8472530 aaaaaactcgaaatcacattgaattctatcaatcaattgttggatgatgcagagacaaagaagtaccagaaccaaaatgttaagaat 8472444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 6238971 - 6238900
Alignment:
Q  31 ctaacaacttctagcctaggctagtttattcccactctttgtgttatttggcataagtttatcattttaaaa 102  Q
    |||||||||| |||| ||||| || |||||||||||||  |||||||||| |||||||||||||||||||||    
T  6238971 ctaacaacttatagcttaggccagcttattcccactctaggtgttatttgacataagtttatcattttaaaa 6238900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 370 - 481
Target Start/End: Original strand, 6590356 - 6590467
Alignment:
Q  370 tgatttgtgagagattagcttcaacagatttcagtgactacttccatgaaaagcttgtgaaaaaacttgaaatcacattggtttctatcaatcaagtgct 469  Q
    ||||| ||||||  || ||||| | |||||||||  ||||||||||||||| |||   ||||||||||||||||||| ||| |||||||||| |||| ||    
T  6590356 tgattcgtgagaagttggcttctagagatttcagaaactacttccatgaaatgctgcggaaaaaacttgaaatcacactggattctatcaatgaagtact 6590455  T
Q  470 ggatgacgcaga 481  Q
    |||||| |||||    
T  6590456 ggatgaagcaga 6590467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 309 - 402
Target Start/End: Complemental strand, 6883609 - 6883516
Alignment:
Q  309 ttaattgatatcatggcagaggttgttgttcgtcgggcatttctttcccccgtcattcaattgatttgtgagagattagcttcaacagatttca 402  Q
    |||||| |||||||||||  ||||||| ||| | |||||||||||||  | | | ||||| ||||| ||||||| |||||||||||||| ||||    
T  6883609 ttaatttatatcatggcaatggttgtttttcctggggcatttctttcgtctgcctttcaagtgattcgtgagaggttagcttcaacagacttca 6883516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 515
Target Start/End: Complemental strand, 6918079 - 6918000
Alignment:
Q  436 ttgaaatcacattggtttctatcaatcaagtgctggatgacgcagagacaaagaagtacgagaatcaaaacgtgaagaat 515  Q
    ||||||||||||||| |||||||||| ||||||| ||||| ||||||  |||| ||||| | || | | |||||||||||    
T  6918079 ttgaaatcacattggattctatcaatgaagtgcttgatgatgcagaggtaaagcagtaccaaaaccgagacgtgaagaat 6918000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 514
Target Start/End: Original strand, 6837946 - 6838028
Alignment:
Q  432 aaacttgaaatcacattggtttctatcaatcaagtgctggatgacgcagagacaaagaagtacgagaatcaaaacgtgaagaa 514  Q
    ||||||||| ||||| ||  ||||||| ||||| || || |||| |||||||||||||||||| | || ||||| ||||||||    
T  6837946 aaacttgaagtcacactgaattctatcgatcaattgttgaatgatgcagagacaaagaagtaccaaaaccaaaatgtgaagaa 6838028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 488
Target Start/End: Original strand, 6849840 - 6849901
Alignment:
Q  427 tgaaaaaacttgaaatcacattggtttctatcaatcaagtgctggatgacgcagagacaaag 488  Q
    |||||||||||||||||| | ||  |||||||||| ||| ||||||||  ||||||||||||    
T  6849840 tgaaaaaacttgaaatcaaactgaattctatcaatgaagagctggatgttgcagagacaaag 6849901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 13268390 - 13268470
Alignment:
Q  33 aacaacttctagcctaggctagtttattcccactctttgtgttatttggcataagtttatcattttaaaatgcagtgaata 113  Q
    ||||||||||||  ||||| |  ||||||||||| ||||||||||||  |  |||||||||| ||||||||| ||| ||||    
T  13268390 aacaacttctagtgtaggccaacttattcccactttttgtgttatttatctgaagtttatcaatttaaaatggagtaaata 13268470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 31 - 268
Target Start/End: Original strand, 35139552 - 35139789
Alignment:
Q  31 ctaacaacttctagcctaggctagtttattcccactctttgtgttatttggcataagtttatcattttaaaatgcagtgaataacaaaatattcacccct 130  Q
    ||||||||||||||| ||||| || |||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||| ||  || ||    
T  35139552 ctaacaacttctagcttaggccagcttattcccactcttggtgttatttgacataagtttatcattttaaaatgtagtgaataacaaaatgtttcccact 35139651  T
Q  131 tnnnnnnngaatatatgcttgaaaaaagtgaatagagttgaggtggttggtattgtaacaataaacaaatgaatgaataaataaataaacatgatggtaa 230  Q
    |       ||||||||  |||||| ||||||||| ||||||||| ||||||||  ||||||||||||||| ||||||||||||||||||||| || ||||    
T  35139652 taaaaaaagaatatatatttgaaacaagtgaatatagttgaggtagttggtatcttaacaataaacaaatcaatgaataaataaataaacatcattgtaa 35139751  T
Q  231 tatggtaggtgtagggaatcgttgaccaaactgatctt 268  Q
    |||||||||||| |||| |||||||| |||||||||||    
T  35139752 tatggtaggtgtggggattcgttgacgaaactgatctt 35139789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 430 - 513
Target Start/End: Original strand, 6572356 - 6572439
Alignment:
Q  430 aaaaacttgaaatcacattggtttctatcaatcaagtgctggatgacgcagagacaaagaagtacgagaatcaaaacgtgaaga 513  Q
    ||||||||||||||||| ||  ||||||||||||| || ||||||| |||||||||||  ||||| | || | |||||||||||    
T  6572356 aaaaacttgaaatcacaatgaattctatcaatcaattgttggatgatgcagagacaaaacagtaccaaaacccaaacgtgaaga 6572439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 488
Target Start/End: Original strand, 12948 - 13009
Alignment:
Q  427 tgaaaaaacttgaaatcacattggtttctatcaatcaagtgctggatgacgcagagacaaag 488  Q
    |||||||||||||||||| | ||  |||||||||| ||| ||||||||  ||||||||||||    
T  12948 tgaaaaaacttgaaatcaaactgaattctatcaatgaagagctggatgttgcagagacaaag 13009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University