View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_high_29 (Length: 513)
Name: NF17763_high_29
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 16 - 375
Target Start/End: Complemental strand, 33674003 - 33673624
Alignment:
| Q |
16 |
ggaagtgtgggttcgagaaagattccaccggatataggattggaattggggttgaagaaaatgggaagagaatgtgaatggtggttgcaaatgttgcttt |
115 |
Q |
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| T |
33674003 |
ggaagtgtgggttcgagaaagattccaccggatataggattggaattggggttgaagaaaatgggaagagaatgtgaatggtggttgcaaatgttgcttt |
33673904 |
T |
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| Q |
116 |
ctagcattgtcgtcattttttgaaagaaaatatctttgatttgatgatttatcggaaatggaaaatgaatagctggttgttatgagttctcgtcgactca |
215 |
Q |
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| T |
33673903 |
ctagcattgtcgtcattgtgtaactgaaaatatctttgatttgatgatttatcggaaatggaaaatgaatagctggttg---tgaattctcgtcgactca |
33673807 |
T |
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| Q |
216 |
gaagtgctaaactccatcgatgatgatgaatcactaa--------tgtctgttactttctctctcag--------nnnnnnnagcattatccc----cta |
295 |
Q |
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| T |
33673806 |
gaagtgctaaactccatcgatgatgatgaatcactaatgactgtttgtctgttactttctctctcagtttttttatagcattagcattatcccctatcta |
33673707 |
T |
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| Q |
296 |
ttatcagcatcactctaaattcttccctcgtcac---ttttttatccacatttggtcaagtttaatttcaagtcaaccataaa |
375 |
Q |
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| T |
33673706 |
ttatcagcgtcactctaaattcttccctcgtcactttttttttatcgacatttggtcaagtttaatttcgagtcaaccataaa |
33673624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 373 - 504
Target Start/End: Complemental strand, 33673593 - 33673459
Alignment:
| Q |
373 |
aaaattgaatgaataaaagttactcctaattttt--attatttgattaataaaatcaaatttgtttct-attatgatgcacaagtcaaataaatcttaca |
469 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||| |
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| T |
33673593 |
aaaattgaatgaataaaagttactccttgtttttttattatttgattaataaaatcaaatttgtttcttattatgatgtacaagtcaaacaaatcttaca |
33673494 |
T |
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| Q |
470 |
ccattgtaaaaactagtttttactattagaataat |
504 |
Q |
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|||||||||||| || | |||||||||||| |||| |
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| T |
33673493 |
ccattgtaaaaattaatgtttactattagattaat |
33673459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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