View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_high_3 (Length: 759)
Name: NF17763_high_3
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 495; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 18 - 524
Target Start/End: Original strand, 45641653 - 45642159
Alignment:
| Q |
18 |
agaatatctgttgtcattttcatttagagcaatgtggtccattaagttgtggttaaaatatgaaagggtgagaactgcttgatcagctgttggtttgaaa |
117 |
Q |
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| T |
45641653 |
agaatatctgttgtcattttcatttagagcaatgtggtccattaagttgtggttaaaatatgaaagggtgagaactgcttgatcagctgttggtttgaaa |
45641752 |
T |
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| Q |
118 |
gaggtggatgaaaattggaatccttgacattcaggaacctctacttgtcctacctcttttgatcgtccgagaagtggtgtattgtgtatataaaaactga |
217 |
Q |
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| T |
45641753 |
gaggtggatgaaaattggaatccttgacattcaggaacctctacttgtcctacctcttttgatcgtccgagaagtggtgtattgtgtatataaaaactga |
45641852 |
T |
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| Q |
218 |
attccctgctatattcataatctctttgttagctgtttgaaatttttgattggtttcctcatgtacacatctttttcattcatgttttgagtcattgtta |
317 |
Q |
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| T |
45641853 |
attccctgctatattcataatctctttgttagctgtttgaaatttttgattggtttcctcatgtactcatctttttcattcatgttttgagtcattgtta |
45641952 |
T |
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| Q |
318 |
tttataaaattagcaactgaaacacaagtctttgttactgttgttcagttggattgagtggcatgctctgattcttatgtatatgtttttgaggatatat |
417 |
Q |
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| T |
45641953 |
tttataaaattagcaactgaaacacaagtctttgttactgtcgttcagttggattgagtggcatgctctgattcttatgtatatgtttttgaggatatat |
45642052 |
T |
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| Q |
418 |
gttaatgcctcacatattttaatcttcatatatttggaaagctgtagagaacttagaaacaaaatttgcattctggattgtatacttgggtcatagattg |
517 |
Q |
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| T |
45642053 |
gttaatgcctcacatattttaatcttcatatatttggaaagctgtagagaacttagaaacaaaatttgcattctggattgtatacttggctcatagattg |
45642152 |
T |
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| Q |
518 |
gtatggc |
524 |
Q |
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| T |
45642153 |
gtatggc |
45642159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 587 - 745
Target Start/End: Original strand, 45642222 - 45642380
Alignment:
| Q |
587 |
gactgatgacattaaagggttccaatgataataactatgcaatcagtattctattgttctctgctgttgtttgtattataattatcgaaaaatgttggac |
686 |
Q |
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| T |
45642222 |
gactgatgacattaaagggttccaatgataataactatgcaatcagtattctattgttctctgctgttgtttgtattataattatcgaaaaatgttggac |
45642321 |
T |
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| Q |
687 |
cctcttctgttaatgctgatgaagtatttggccagatttcttttgatgccgtccctttg |
745 |
Q |
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| T |
45642322 |
cctcttctgttaatgctgatgcagtatttggccagatttcttttgatgccatccctttg |
45642380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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