View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17763_high_30 (Length: 504)
Name: NF17763_high_30
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_30 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 19 - 489
Target Start/End: Complemental strand, 36717551 - 36717079
Alignment:
| Q |
19 |
gatgatgcaaggaaaaatctaaaatgtatacagctataatcttcaagtagaagattacacaaactggatcaaacaccaagttctctgctttccttcttga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36717551 |
gatgatgcaaggaaaaatctaaaatgtatacagctataatcttcaagtagaagattacacaaactggatcaaacaccaagttctctgctttccttcttga |
36717452 |
T |
|
| Q |
119 |
agccctataaatcatcagaagatgattaagctcagcccaaatctcctttcccatttgctctaagatttctccttcaattctct--aattttttcctgcac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36717451 |
agccctataaatcatcagaagatgattaagctcagcccaaatctcctttcccatttgctctaagatttctccttcaattctctttaattttttcctgcac |
36717352 |
T |
|
| Q |
217 |
tttaaatcttcttcaattcacctcatggacatcaaggtcctaacccttttctgatgttctgcttttttggctgtaggggttctcttgagtttcatcaact |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36717351 |
tttaaatcttcttcaattcacctcatggacatcaaggtcctaacccttttctgatgttctgcttttttggctgtaggggttctcttgagtttcatcaact |
36717252 |
T |
|
| Q |
317 |
cttgcttcacttcacgctcaattatatcaattgaatgcaatagcttcttctgaggagtcagaagctcagattcaccatcttcagcagcaggaagttttgc |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36717251 |
cttgcttcacttcacgctcaattatatcaatcgaatgcaatagcttcttctgaggagtcagaagctcagattcaccatcttcagcagcaggaagttttgc |
36717152 |
T |
|
| Q |
417 |
aatgtcaatgatgatttttggaactttacttccataaggtgttttcagcttgatgcaggattttggtgatttt |
489 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36717151 |
aatgtcaatgatgatttttggaactttacttccataaggtgttttcagcttgatgcaggattttggtgatttt |
36717079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 283 - 488
Target Start/End: Complemental strand, 1482500 - 1482292
Alignment:
| Q |
283 |
ttggctgtaggggttctcttgagtttcatcaactcttgcttcacttcacgctcaattatatcaattgaatgcaatagct---tcttctgaggagtcagaa |
379 |
Q |
| |
|
||||||||||||||||| || ||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
1482500 |
ttggctgtaggggttctttttagtttcatcaactattgcttaacttcacgctcaattatatcaatcgaatgcaatagctgcttcttctgaggagtcagaa |
1482401 |
T |
|
| Q |
380 |
gctcagattcaccatcttcagcagcaggaagttttgcaatgtcaatgatgatttttggaactttacttccataaggtgttttcagcttgatgcaggattt |
479 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
1482400 |
gctctgattcaccatcttcagcagcaggaagtttcgcaatgtcgatgatgatttttggaactttacttccataaggtgtactcagctttatgcaggattt |
1482301 |
T |
|
| Q |
480 |
tggtgattt |
488 |
Q |
| |
|
||||||||| |
|
|
| T |
1482300 |
tggtgattt |
1482292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 21 - 248
Target Start/End: Complemental strand, 1482816 - 1482592
Alignment:
| Q |
21 |
tgatgcaaggaaaaatctaaaatgtatacagctataatcttcaagtagaagattacacaaactggatcaaacaccaagttctctgctttccttcttgaag |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| || | |||| || ||||||||||| |||||| || | |
|
|
| T |
1482816 |
tgatgcaaggaaaaatctaaaatgtatacagctttaatcttcaagcagaagattaagcagattggaaaaatcaccaagttctttgcttt------tggat |
1482723 |
T |
|
| Q |
121 |
ccctataaatcatcagaagatgattaagctcagcccaaatctcctttcccatttgctctaagatttctccttcaattctct--aat-tttttcctgcact |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||| |||||||||| | ||| ||| |||| ||||||| |
|
|
| T |
1482722 |
ccctataaatcatcagaagatgattaagctcagcccaaatctccttttccttttgctctatgatatctccttcaactatcttcaatagtttttctgcact |
1482623 |
T |
|
| Q |
218 |
ttaaatcttcttcaattcacctcatggacat |
248 |
Q |
| |
|
| ||||||| ||||||||||||||||||||| |
|
|
| T |
1482622 |
tcaaatctttttcaattcacctcatggacat |
1482592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 1483313 - 1483261
Alignment:
| Q |
19 |
gatgatgcaaggaaaaatctaaaatgtatacagctataatcttcaagtagaag |
71 |
Q |
| |
|
|||| ||||||||||||| |||||||| |||| || |||||||||||| |||| |
|
|
| T |
1483313 |
gatggtgcaaggaaaaatttaaaatgtttacaactgtaatcttcaagtggaag |
1483261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University