View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_high_36 (Length: 483)
Name: NF17763_high_36
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 1e-73; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 3 - 278
Target Start/End: Complemental strand, 3704143 - 3703867
Alignment:
| Q |
3 |
ggtgtttgttaagtacttaacatcaaaggattttgttttgt---attatatgcaatgatgccta-ataaaggcatgtatcagacattagaaattgggtaa |
98 |
Q |
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| T |
3704143 |
ggtgtttgtgaattacttaacatctaaggattttgtttcgtcttattatatgtaatgatgcctatataaaggcatgtagcagacattagaaattgggtaa |
3704044 |
T |
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| Q |
99 |
agggtgggtttattttagcttaaaaaagattttgggctnnnnnnnntacagggataannnnnnnnagagattttgcaactagaacctatagaaattttga |
198 |
Q |
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| T |
3704043 |
-gggtgcgtttattttagcttaaaaaagattttgggctaaaaaaa-tacatggata-cttttttaagagattttgcaactagaacttatagaaattttga |
3703947 |
T |
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| Q |
199 |
agtggacttatatattgactatgagttttttaacaaataacttgtaaaagttaaactcaaacttgaacattctacttata |
278 |
Q |
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| T |
3703946 |
agtggacttatatattgactatgagttttttaacaaataacttgtaaaagttaaattcaaactaggacattctacttata |
3703867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 324 - 444
Target Start/End: Complemental strand, 3703823 - 3703699
Alignment:
| Q |
324 |
ttcattctgctatctgttgtag-catgctttttggcataaagcttatatgaaaattatcgtttacttaaattatctccttcaatccatttg---ttggct |
419 |
Q |
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|||||||||||||||||| || |||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| |||||| |
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| T |
3703823 |
ttcattctgctatctgttataaacatgatttttggcataaagcttataacaaaattaccgtttacttaaattatctccttcaatccaattgttattggct |
3703724 |
T |
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| Q |
420 |
caagtttaatatgattcgactattg |
444 |
Q |
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| T |
3703723 |
caagtttaatatgattcgactattg |
3703699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 324 - 447
Target Start/End: Complemental strand, 3679738 - 3679616
Alignment:
| Q |
324 |
ttcattctgctatctgttgtagcatgctttttggcataaagcttatatgaaaattatcgtttacttaaattatctccttcaatccatttgttggctcaag |
423 |
Q |
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| T |
3679738 |
ttcattctgctatctgttataacatgattcttggcataaagct-ataacaaaattactgtttacttaaattatctccttcaatccaattgttggctcaag |
3679640 |
T |
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| Q |
424 |
tttaatatgattcgactattgcag |
447 |
Q |
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|||||||||||| ||||| ||||| |
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| T |
3679639 |
tttaatatgatttgactagtgcag |
3679616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 3695413 - 3695351
Alignment:
| Q |
170 |
tttgcaactagaacctatagaaattttgaagtggacttatatattgactatgagttttttaac |
232 |
Q |
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| T |
3695413 |
tttgcaactagaacttatagatattttgaaatggacttatatattaactatgagttttttaac |
3695351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 380
Target Start/End: Complemental strand, 3675933 - 3675873
Alignment:
| Q |
324 |
ttcattctgctatctgttgtagcat----gctttttggcataaagcttatatgaaaattat |
380 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
3675933 |
ttcactctgctatctgttgtagcatacatgctttttggcataaagcttatatcaaaattat |
3675873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 3676009 - 3675975
Alignment:
| Q |
243 |
taaaagttaaactcaaacttgaacattctacttat |
277 |
Q |
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| T |
3676009 |
taaaagttaaactcaaacttggacattctacttat |
3675975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 3650577 - 3650517
Alignment:
| Q |
169 |
ttttgcaac-tagaacctatagaaattttgaagtggacttatatattgactatgagttttt |
228 |
Q |
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||||||||| ||| || |||| |||| ||||| |||||||||||||||||||| ||||||| |
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| T |
3650577 |
ttttgcaacctaggacttatataaatattgaaatggacttatatattgactattagttttt |
3650517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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