View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17763_high_39 (Length: 458)

Name: NF17763_high_39
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17763_high_39
NF17763_high_39
[»] chr6 (2 HSPs)
chr6 (12-443)||(5919887-5920318)
chr6 (36-182)||(14613262-14613408)
[»] chr5 (1 HSPs)
chr5 (7-439)||(20324194-20324623)
[»] chr1 (2 HSPs)
chr1 (7-132)||(32612606-32612731)
chr1 (96-282)||(52777545-52777731)
[»] chr3 (4 HSPs)
chr3 (96-282)||(19586940-19587126)
chr3 (96-282)||(12285165-12285351)
chr3 (162-264)||(44667847-44667949)
chr3 (109-137)||(4646295-4646323)
[»] scaffold0329 (1 HSPs)
scaffold0329 (96-282)||(10874-11060)
[»] chr4 (3 HSPs)
chr4 (96-282)||(22177171-22177357)
chr4 (58-190)||(18834149-18834281)
chr4 (36-143)||(35087208-35087315)
[»] chr2 (2 HSPs)
chr2 (84-245)||(34891091-34891252)
chr2 (163-283)||(29499310-29499430)
[»] scaffold0257 (1 HSPs)
scaffold0257 (36-138)||(13751-13853)
[»] chr7 (2 HSPs)
chr7 (36-138)||(19653410-19653512)
chr7 (79-132)||(3820156-3820209)


Alignment Details
Target: chr6 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 12 - 443
Target Start/End: Original strand, 5919887 - 5920318
Alignment:
Q  12 atgaaattgagttctgatcatgagaatgaaatttttcacatgaagggaaacttctgatttagactttagaagaataatccataaaaatctgctatggtca 111  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5919887 atgaaattgagttctgatcatgagaatgaaatttttcacatgaacggaaacttctgatttagactttagaagaataatccataaaaatctgctatggtca 5919986  T
Q  112 tcaagtatagtgagaaaatatctatggccatggacatatgaaattgaaagaggaccccatatgtcaaaatgaagcaattcaaaattggtagaggcatgag 211  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5919987 tcaagtatagtgagaaaatatctatggccatggacatatgaagttgaaataggaccccatatgtcaaaatgaagcaattcaaaattggtagaggcatgag 5920086  T
Q  212 ataaacttgaagaaaaaggtaaatgcttttgtttagaaaagtgacaaatatcaaacacatctttattattgtgaacaatagatggatacaaatgagacat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5920087 ataaacttgaagaaaaaggtaaatgcttttgtttagaaaagtgacaaatatcacacacatctttattattgtgaacaatagatggatacaaatgagacat 5920186  T
Q  312 tttggtcattctttgattagagagatgaccaagccttaagtgccataaggcagtaactggaatacaattgcttgaattacaactgatagaagaagaaaaa 411  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5920187 tttggtcattctttgattagagagattaccaagtcttaagtgccataaggcagtaactggaatacaattgcttgaatcacaactgatagaagaagaaaaa 5920286  T
Q  412 ttacaagatttattgggggaatgcataaaact 443  Q
    ||||||||||||||||||||||||||||||||    
T  5920287 ttacaagatttattgggggaatgcataaaact 5920318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 182
Target Start/End: Complemental strand, 14613408 - 14613262
Alignment:
Q  36 aatgaaatttttcacatgaagggaaacttctgatttagactttagaagaataatccataaaaatctgctatggtcatcaagtatagtgagaaaatatcta 135  Q
    |||||| ||||| |||||  | |||||||| ||||| || |||| ||||| |||||| | |||||| || |  |||||||| || |||||||||||||||    
T  14613408 aatgaagtttttaacatgttgagaaacttcagattttgattttaaaagaacaatccaaacaaatctactgtaatcatcaagaatggtgagaaaatatcta 14613309  T
Q  136 tggccatggacatatgaaattgaaagaggaccccatatgtcaaaatg 182  Q
    ||   ||| ||||| | | | || ||||||||||| || ||||||||    
T  14613308 tgattatgtacataagcagtggatagaggaccccaaatatcaaaatg 14613262  T

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Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 7 - 439
Target Start/End: Original strand, 20324194 - 20324623
Alignment:
Q  7 gtgagatgaaattgagttctgatcatgagaatgaaatttttcacatgaagggaaacttctgatttagactttagaagaataatccataaaaatctgctat 106  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  20324194 gtgacatgaaattgagttctgatcatgagaatgaagtttttcacatgaagagaaacttctgatttagattttagaagaataatccataaaaatctgctat 20324293  T
Q  107 ggtcatcaagtatagtgagaaaatatctatggccatggacatatgaaattgaaagaggaccccatatgtcaaaatgaagcaattcaaaattggtagaggc 206  Q
    | ||||||||||||||||||||||||||||| ||||||||| ||||||| |||| |||||||||||||||||||||||| ||||||||||| ||||| ||    
T  20324294 gatcatcaagtatagtgagaaaatatctatgaccatggacagatgaaatggaaataggaccccatatgtcaaaatgaagtaattcaaaattagtagaagc 20324393  T
Q  207 atgagataaacttgaagaaaaaggtaaatgcttttgtttagaaaagtgacaaatatcaaacacatctttattattgtgaacaatagatggatacaaatga 306  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  20324394 atgagataaacttgaagaaaaaggtaaatgtttttgtttagaaaagtgacaaatatcacacacatctctattattgtgaacaatagatggatacaaatga 20324493  T
Q  307 gacattttggtcattctttgattagagagatgaccaagccttaagtgccataaggcagtaactggaatacaattgcttgaattacaactgatagaagaag 406  Q
    ||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||| | ||||||||||||||   |||||    
T  20324494 gacattttgatcattctttgattagagagatgaccaagcctaaaatgccataaggcagcaactggaatacaattgttggaattacaactgat---agaag 20324590  T
Q  407 aaaaattacaagatttattgggggaatgcataa 439  Q
    ||||||||||||||||||| || ||||||||||    
T  20324591 aaaaattacaagatttatttggagaatgcataa 20324623  T

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Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 32612606 - 32612731
Alignment:
Q  7 gtgagatgaaattgagttctgatcatgagaatgaaatttttcacatgaagggaaacttctgatttagactttagaagaataatccataaaaatctgctat 106  Q
    |||| ||||||||||||| |||||||||| || ||| ||||||||||||  ||||||||||| || || |||| |||||| | ||||| |||||||||||    
T  32612606 gtgacatgaaattgagttttgatcatgaggataaaaattttcacatgaatagaaacttctgactttgattttaaaagaatgacccatagaaatctgctat 32612705  T
Q  107 ggtcatcaagtatagtgagaaaatat 132  Q
    | ||||| | ||| ||||||||||||    
T  32612706 gatcatccaatatggtgagaaaatat 32612731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 96 - 282
Target Start/End: Complemental strand, 52777731 - 52777545
Alignment:
Q  96 aaatctgctatggtcatcaagtatagtgagaaaatatctatggccatggacatatgaaattgaaagaggaccccatatgtcaaaatgaagcaattcaaaa 195  Q
    |||||||||||| ||||| |  ||||| ||||| ||||| || ||||| ||| ||| ||| || |  |||||||| || |||| |||||| |||||||||    
T  52777731 aaatctgctatgatcatctacaatagtaagaaagtatctgtgaccatgtacagatgcaatagataatggaccccaaatatcaagatgaagtaattcaaaa 52777632  T
Q  196 ttggtagaggcatgagataaacttgaagaaaaaggtaaatgcttttgtttagaaaagtgacaaatatcaaacacatctttattattg 282  Q
    |||||||| |||||||| | |||||||   ||||||||||| || ||||||| ||| || || | |||| | |||||||||||||||    
T  52777631 ttggtagaagcatgagaaatacttgaattgaaaggtaaatgtttatgtttagcaaaatggcacaaatcacaaacatctttattattg 52777545  T

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Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 96 - 282
Target Start/End: Original strand, 19586940 - 19587126
Alignment:
Q  96 aaatctgctatggtcatcaagtatagtgagaaaatatctatggccatggacatatgaaattgaaagaggaccccatatgtcaaaatgaagcaattcaaaa 195  Q
    |||||||||||| ||||| |  ||||| ||||| ||||| || ||||| ||| ||| ||| || |  |||||||| || |||| |||||| |||||||||    
T  19586940 aaatctgctatgatcatctacaatagtaagaaagtatctgtgaccatgtacagatgcaatagataatggaccccaaatatcaagatgaagtaattcaaaa 19587039  T
Q  196 ttggtagaggcatgagataaacttgaagaaaaaggtaaatgcttttgtttagaaaagtgacaaatatcaaacacatctttattattg 282  Q
    |||||||| |||||||| | |||||||   ||||||||||| || ||||||| ||| ||||| | |||| |  ||||||||||||||    
T  19587040 ttggtagaagcatgagaaatacttgaattgaaaggtaaatgtttatgtttagcaaaatgacacaaatcacaagcatctttattattg 19587126  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 282
Target Start/End: Complemental strand, 12285351 - 12285165
Alignment:
Q  96 aaatctgctatggtcatcaagtatagtgagaaaatatctatggccatggacatatgaaattgaaagaggaccccatatgtcaaaatgaagcaattcaaaa 195  Q
    |||||||||||| ||||| |  ||||| ||||| ||||| || ||||| ||| ||| ||| || |  |||||||| || |||| |||||| |||||| ||    
T  12285351 aaatctgctatgatcatctacaatagtaagaaagtatctgtgaccatgtacagatgcaatagataatggaccccaaatatcaagatgaagtaattcataa 12285252  T
Q  196 ttggtagaggcatgagataaacttgaagaaaaaggtaaatgcttttgtttagaaaagtgacaaatatcaaacacatctttattattg 282  Q
    |||||||| |||||||| | |||||||   ||||||||||| || ||||||| ||| || || | |||| |  ||||||||||||||    
T  12285251 ttggtagaagcatgagaaatacttgaattgaaaggtaaatgtttatgtttagcaaaatggcacaaatcacaagcatctttattattg 12285165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 44667847 - 44667949
Alignment:
Q  162 aggaccccatatgtcaaaatgaagcaattcaaaattggtagaggcatgagataaacttgaagaaaaaggtaaatgcttttgtttagaaaagtgacaaata 261  Q
    ||||||||| || |||| |||||| | ||||||| |||  || |||||| ||  ||| |  ||||| |||||||| |||||||||| |||||||||||||    
T  44667847 aggaccccaaatatcaagatgaagaagttcaaaaatggatgaagcatgatattcactcggtgaaaagggtaaatgtttttgtttagcaaagtgacaaata 44667946  T
Q  262 tca 264  Q
    |||    
T  44667947 tca 44667949  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 137
Target Start/End: Original strand, 4646295 - 4646323
Alignment:
Q  109 tcatcaagtatagtgagaaaatatctatg 137  Q
    |||||||||||||||||||||||||||||    
T  4646295 tcatcaagtatagtgagaaaatatctatg 4646323  T

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Target: scaffold0329 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 282
Target Start/End: Complemental strand, 11060 - 10874
Alignment:
Q  96 aaatctgctatggtcatcaagtatagtgagaaaatatctatggccatggacatatgaaattgaaagaggaccccatatgtcaaaatgaagcaattcaaaa 195  Q
    |||||||||||| ||||| |  ||||| ||||| ||||| || ||||| ||| ||| ||| || |  |||||||| || |||| |||||| |||||||||    
T  11060 aaatctgctatgatcatctacaatagtaagaaagtatctgtgaccatgtacagatgcaatagataatggaccccaaatatcaagatgaagtaattcaaaa 10961  T
Q  196 ttggtagaggcatgagataaacttgaagaaaaaggtaaatgcttttgtttagaaaagtgacaaatatcaaacacatctttattattg 282  Q
    |||||||| |||||||| | ||| |||   ||||||||||| || ||||||| ||| || || | |||| | |||||||||||||||    
T  10960 ttggtagaagcatgagaaatactggaattgaaaggtaaatgtttatgtttagcaaaatggcacaaatcacaaacatctttattattg 10874  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 282
Target Start/End: Original strand, 22177171 - 22177357
Alignment:
Q  96 aaatctgctatggtcatcaagtatagtgagaaaatatctatggccatggacatatgaaattgaaagaggaccccatatgtcaaaatgaagcaattcaaaa 195  Q
    |||||||||||| ||||| |  ||||| ||||| ||||| || ||||| ||| ||| ||| || |  |||||||| || |||| |||||| |||||||||    
T  22177171 aaatctgctatgatcatctacaatagtaagaaagtatctgtgaccatgtacagatgcaatagataatggaccccaaatatcaagatgaagtaattcaaaa 22177270  T
Q  196 ttggtagaggcatgagataaacttgaagaaaaaggtaaatgcttttgtttagaaaagtgacaaatatcaaacacatctttattattg 282  Q
    |||||||| |||||||| | ||| |||   ||||||||||| || ||||||| ||| || || | |||| | |||||||||||||||    
T  22177271 ttggtagaagcatgagaaatactggaattgaaaggtaaatgtttatgtttagcaaaatggcacaaatcacaaacatctttattattg 22177357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 190
Target Start/End: Original strand, 18834149 - 18834281
Alignment:
Q  58 gaaacttctgatttagactttagaagaataatccataaaaatctgctatggtcatcaagtatagtgagaaaatatctatggccatggacatatgaaattg 157  Q
    |||||||| || ||||| || | |||||| ||||||||||||||| ||||||||||||  ||||| ||||||||| |||| | ||| ||  |   ||| |    
T  18834149 gaaacttcagacttagatttcaaaagaatgatccataaaaatctggtatggtcatcaacaatagtaagaaaatatttatgtctatgtactgaattaatgg 18834248  T
Q  158 aaagaggaccccatatgtcaaaatgaagcaatt 190  Q
     ||| || |||| ||||||||||||||||||||    
T  18834249 caaggggtccccgtatgtcaaaatgaagcaatt 18834281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 35087315 - 35087208
Alignment:
Q  36 aatgaaatttttcacatgaagggaaacttctgatttagactttagaagaataatccataaaaatctgctatggtcatcaagtatagtgagaaaatatcta 135  Q
    |||||||||||| ||||| || || ||||| | ||| | ||| || | ||||||||| |  |||||||||||||||||||||||||| | |||||| |||    
T  35087315 aatgaaatttttgacatggagagagacttcagctttggtcttaagtaaaataatccaaaggaatctgctatggtcatcaagtatagtcaaaaaataccta 35087216  T
Q  136 tggccatg 143  Q
    || |||||    
T  35087215 tgaccatg 35087208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 245
Target Start/End: Original strand, 34891091 - 34891252
Alignment:
Q  84 aataatccataaaaatctgctatggtcatcaagtatagtgagaaaatatctatggccatggacatatgaaattgaaagaggaccccatatgtcaaaatga 183  Q
    ||||||||||| |||||| ||||| |||||||  || || | ||||||  | |||||||| ||| ||||||  || | ||| || ||||| |||| |||     
T  34891091 aataatccatagaaatctactatgatcatcaacaatggttaaaaaatacttgtggccatgaacagatgaaacagacaaagggcctcatatatcaagatgc 34891190  T
Q  184 agcaattcaaaattggtagaggcatgagataaacttgaagaaaaaggtaaatgcttttgttt 245  Q
    | ||||||||||||||  || |||||||||||||| |||| |||||| | ||| ||||||||    
T  34891191 aacaattcaaaattggatgatgcatgagataaactggaagtaaaagggatatgtttttgttt 34891252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 283
Target Start/End: Complemental strand, 29499430 - 29499310
Alignment:
Q  163 ggaccccatatgtcaaaatgaagcaattcaaaattggtagaggcatgagataaacttgaagaaaaaggtaaatgcttttgtttagaaaagtgacaaatat 262  Q
    |||||||| ||||||| |||||  | ||||||||||||||| |||||| |   ||| |||| ||||| |||||| || ||||||||||| || || | ||    
T  29499430 ggaccccaaatgtcaagatgaataagttcaaaattggtagaagcatgataattactagaagtaaaagataaatgtttatgtttagaaaaatggcacaaat 29499331  T
Q  263 caaacacatctttattattgt 283  Q
    || | ||||||||||||||||    
T  29499330 cacagacatctttattattgt 29499310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 13853 - 13751
Alignment:
Q  36 aatgaaatttttcacatgaagggaaacttctgatttagactttagaagaataatccataaaaatctgctatggtcatcaagtatagtgagaaaatatcta 135  Q
    |||||| ||||| |||||  | |||||||| ||||| || |||| ||||| |||||| | |||||| || |  |||||||| || |||||||||||||||    
T  13853 aatgaagtttttaacatgttgagaaacttcagattttgattttaaaagaacaatccaaacaaatctactgtaatcatcaagaatggtgagaaaatatcta 13754  T
Q  136 tgg 138  Q
    |||    
T  13753 tgg 13751  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 19653512 - 19653410
Alignment:
Q  36 aatgaaatttttcacatgaagggaaacttctgatttagactttagaagaataatccataaaaatctgctatggtcatcaagtatagtgagaaaatatcta 135  Q
    |||||| ||||| |||||  | |||||||| ||||| || |||| ||||| |||||| | |||||| || |  |||||||| || |||||||||||||||    
T  19653512 aatgaagtttttaacatgttgagaaacttcagattttgattttaaaagaacaatccaaacaaatctactgtaatcatcaagaatggtgagaaaatatcta 19653413  T
Q  136 tgg 138  Q
    |||    
T  19653412 tgg 19653410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 3820156 - 3820209
Alignment:
Q  79 agaagaataatccataaaaatctgctatggtcatcaagtatagtgagaaaatat 132  Q
    |||||||||||||| | | |||| ||||| |||||||| |||||||||||||||    
T  3820156 agaagaataatccaaacatatctactatgatcatcaagaatagtgagaaaatat 3820209  T

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