View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_high_43 (Length: 429)
Name: NF17763_high_43
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_43 |
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| [»] scaffold0048 (1 HSPs) |
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Alignment Details
Target: scaffold0048 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 70009 - 70417
Alignment:
| Q |
1 |
tggtgaacaataatgaaaaaatatgggactggatttgtgtaaacttatttaacctatcaaaattataatgtagaacactagaaaccttaaggttttactt |
100 |
Q |
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| T |
70009 |
tggtaaacaattatgaaaaaatatgcgactgaatttgtgtaaacttgtttaacctatcaaaattataatgtagaacactagaaaccttaaggttgtactt |
70108 |
T |
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| Q |
101 |
gacttatgaatatttcttaatgtaacgcggatgagattgtagttgattttcttgtaggtttacctaaaacctcaaagtagtatggagttatttggctcat |
200 |
Q |
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| T |
70109 |
tacttatgaatatttcttaatgtaatggggatgagattgtagttgattttcttgtaggtttacctagaacctcaaagtagtatggagttatttgggtcat |
70208 |
T |
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| Q |
201 |
tttagatactaatcattttaatcaaatgaacatcacgtattccatggatttgtcaaccaaatagttcataaataagattgtgacgctgcatgaaattatg |
300 |
Q |
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| T |
70209 |
tttagatactaatcattttaatcaaataaacatcacgtattccatggacttgtcaaccaaatagtacataaataagattgtgaagctgca-------atg |
70301 |
T |
|
| Q |
301 |
ttattagaatttcataaagtgacccatgatacaccnnnnnnnnnnnnnnnnnnnnncatggatatttggttacaaagcttaggataaattcatcctataa |
400 |
Q |
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| T |
70302 |
ttattagaatttcataaagagacccttgatacacctttttgtttttggaaaattttcatggatatttgattagaaatcttaggatgaattcatcctataa |
70401 |
T |
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| Q |
401 |
tccacaatcatgtggt |
416 |
Q |
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| T |
70402 |
tccacaatcatgtggt |
70417 |
T |
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