View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17763_high_44 (Length: 426)
Name: NF17763_high_44
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_high_44 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 416
Target Start/End: Original strand, 41423959 - 41424355
Alignment:
| Q |
17 |
ttctttcttctgtcaataatgatattctgaaaaagctttgcaaggaactgtttcaaatttgtttgcacttcttctacatgatttctaaacagnnnnnnnn |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41423959 |
ttctttcttctgtcaataatgatattctgaaaaagctttgccaggaactgtttcaaatttgtttgcacttcttctacatgatttctaaacagttttt--- |
41424055 |
T |
|
| Q |
117 |
atctaatttgattcatgcaagcactaatttttgtataatttcttctaataaatttgtaaaggtgcttgtggtacaagagaaacactgttctcctgcaact |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41424056 |
atctaatttgattcatgcaagcactaatttttgtataatttcttctaataaatctgtaaaggtgcttgtggtacaagagaaacactgttctcctgcaact |
41424155 |
T |
|
| Q |
217 |
cttggcctttggaaaataccaactggattcattcatgaggtatgtatgcttcacttaactttcctaaatgctcaataaaccaaatagaaaaccgttggaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41424156 |
cttggcctttggaaaataccaactggattcattcatgaggtatgtatgcttcacttaactttcctaaatgctcaataaaccaaatagaaaaccgttggaa |
41424255 |
T |
|
| Q |
317 |
cagaaacccttatttaatggtaaacagatgtgaaaagcacaaacagataacacatgatatatttgatcacgttgttcagtcaattgtgcttatgtctgtg |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41424256 |
tagaaacccttatttaatggtaaacagatgtgaaaagcacaaacagataacacatgatatatttgatcacgttgttcagtcaattgtgcttatgtctgtg |
41424355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University